Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1976g00004 ATGGCGACGTACTTCCATGGTAATTCAGAAATCCAAGCACCCGACGGCGGTCTTCAAACTCTTGTACTCATGAACCCAGGCTACATCCAGTACTCCGACACACCTCCGCCGCAACCATCGCATCCCGGAAACCTTGTCTTCCTCAATTCTGCCAACAACTCGCTCCCTTCCCAAACCCTACAACACGCGCCGCCCTCTCACACCCAACAATTCGTCGGCATCCCTCTCCCCGCTGCTTCCTCCCACGACCCCACGCACCACTCCATGCATCCCCATCACGATGTCTCTGCTCTGCATGGATTCGTGCCCCGCATGCAGTACAACCTCTGGAGTACAGTCAACTCCAACGCGGCGGCGAGTGATACCCCACGCTCTCAACGGGGTCTGTCCCTCAGCCTTTCCTCTCAGCAGGCAGGGATGGGGTCTTTCCGGGTCGATCGTGACGTACCATCACAGGGTCAGGCGCCAACTATGTCAGGGGATGATGTGCGTGCGTCAGGTGGGTCACCGTCTTCGGCTTCCGGAGTTACTAATGGCGTTTCAGGGATTCAGAGCGTGCTTCAGGGCTCTAAGTACTTGAAGGCAGCTCAGGAACTGCTAGACGAGGTCGTGAACGTCAACGATGGGATAAAGAGCGAAATGGCTAAGAAAAGTCGCAGCCATACAAAGGCGAATAAAGATTCTTCCACGGCGGCGAGTGGAGATGGTTCAGCTGGCGGAGAGGGAAGCGCCAAGCCCAGCTCTGAGCTCACCACTGCGGACAAACAAGATATTCAGATGAAGAAGGCGAAGTTGATCAGCATGCTTGACGAGGTGGAGCAGAGGTACAGACAGTATCACCATCAGATGCAGATGGTTAGTTCTTCATTTGAACAAGCTGCGGGGATTGGTTCGGCAAGAACATACACAGCACTAGCACTACAAACGATCTCGAAGCAGTTTCGGTGTTTGAAAGATGCAATAATGGGCCAAATTCGAGCTGCCAACAAGAGCTTAGGAGAGGAAGATTGCTTCGGTACAAAAATGGAAGGCTCGAGGCTTAAATACGTGGACCATCATCTACGCCAACAGCGAGCTCTCCAACAGTTGGGAATGATCCAGCACAATGCTTGGAGACCCCAGAGAGGATTGCCTGAAAGATCTGTTTCTGTTCTTCGTGCTTGGCTCTTCGAGCACTTCCTCCACCCTTACCCCAAGGATTCAGACAAACAAATGCTTGCAAAACAAACAGGGCTCACCAGGGGCCAGGTCTCGAATTGGTTCATAAATGCGCGAGTCCGATTGTGGAAGCCGATGGTGGAAGAGATGTACTTGGAGGAGATGAAGGAGCAGGAACAGAACGGTGGGGAGGAGAAATCAAGCAAGAGTAGTGAAGATCCTGGCATAAAATCTTCAGCAGCCCCACAAGAGAAATCTCCTGCCTCTGCCACTGAACCCAGAAGCTTCAATTTCAAACAAGACGTTTCCACAAACCCCAACACTCCAACAGTATCAGTATCTACGCCATCGACATCACCAGTTGGAGCAAATGCCAGAAACCACCCAGGGTTCAGCTTCATGGGGACTTCAGAGCTAGATGGGATCGCACAACCGAGTCCCAAGAAACCAAGGAACCATGAGATTCTGCAGTCCCCAATTAACGTTGATATGAAGCCCGATGATGCAGGGAATGGTCAAATCTCCATGAAATTTGGGGATGAGAGGCAGAGCAGAGATGGGTACTCTTTCATGGGAAATCAGACGAACTTCATTGGAGGATTTGGGCAGTACCCAATTACAGAAATTGATAGGTTTGAGGCAGAGCAATTCACAACAAGATTCTCAGGTAATAATGGGGTTTCCCTCACCCTTGGTCTTCCCCACTGTGACTCATTATCAGCAGCGACGCATCAAACATTTCTTCCAAACCAGAGCATTCAACTTGGAAGAAGGATGGAGCTGGGTGAACCAAACGAGTTTGGCGGCATAAACACTTCAACTCCTCTCTCTTCGGCTGCATTTGAGAATATCAATATGCAGAACCCCAAGAAGTTTGCTGCCCAATTGTTGCCAGACTTCGTGGCTTGA 2067 0.5099 MATYFHGNSEIQAPDGGLQTLVLMNPGYIQYSDTPPPQPSHPGNLVFLNSANNSLPSQTLQHAPPSHTQQFVGIPLPAASSHDPTHHSMHPHHDVSALHGFVPRMQYNLWSTVNSNAAASDTPRSQRGLSLSLSSQQAGMGSFRVDRDVPSQGQAPTMSGDDVRASGGSPSSASGVTNGVSGIQSVLQGSKYLKAAQELLDEVVNVNDGIKSEMAKKSRSHTKANKDSSTAASGDGSAGGEGSAKPSSELTTADKQDIQMKKAKLISMLDEVEQRYRQYHHQMQMVSSSFEQAAGIGSARTYTALALQTISKQFRCLKDAIMGQIRAANKSLGEEDCFGTKMEGSRLKYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRGQVSNWFINARVRLWKPMVEEMYLEEMKEQEQNGGEEKSSKSSEDPGIKSSAAPQEKSPASATEPRSFNFKQDVSTNPNTPTVSVSTPSTSPVGANARNHPGFSFMGTSELDGIAQPSPKKPRNHEILQSPINVDMKPDDAGNGQISMKFGDERQSRDGYSFMGNQTNFIGGFGQYPITEIDRFEAEQFTTRFSGNNGVSLTLGLPHCDSLSAATHQTFLPNQSIQLGRRMELGEPNEFGGINTSTPLSSAAFENINMQNPKKFAAQLLPDFVA 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1976g00004 688 SMART HOX_1 371 435 IPR001356 GO:0003677
Pral1976g00004 688 MobiDBLite consensus disorder prediction 152 177 - -
Pral1976g00004 688 FunFam BEL1-like homeodomain protein 9 374 436 - -
Pral1976g00004 688 MobiDBLite consensus disorder prediction 214 255 - -
Pral1976g00004 688 SMART prehox3 181 323 IPR006563 -
Pral1976g00004 688 Coils Coil 255 275 - -
Pral1976g00004 688 CDD homeodomain 371 432 IPR001356 GO:0003677
Pral1976g00004 688 MobiDBLite consensus disorder prediction 118 177 - -
Pral1976g00004 688 MobiDBLite consensus disorder prediction 441 458 - -
Pral1976g00004 688 Pfam Associated with HOX 186 322 IPR006563 -
Pral1976g00004 688 MobiDBLite consensus disorder prediction 459 511 - -
Pral1976g00004 688 ProSiteProfiles 'Homeobox' domain profile. 368 431 IPR001356 GO:0003677
Pral1976g00004 688 Gene3D - 367 445 - -
Pral1976g00004 688 MobiDBLite consensus disorder prediction 441 513 - -
Pral1976g00004 688 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 82 457 - -
Pral1976g00004 688 MobiDBLite consensus disorder prediction 118 141 - -
Pral1976g00004 688 Pfam Homeobox KN domain 388 427 IPR008422 GO:0003677|GO:0006355
Pral1976g00004 688 SUPERFAMILY Homeodomain-like 372 437 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1976g00004 Pral-Chr1976 26228 30328 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1976g00004 1 688 Homeobox Transcription Factor Family AT2G35940 50.067 0.0 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pral1976g00004 POX 1.4e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1976g00004 - - qsa:O6P43_006028 972.23