Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1976g00003 ATGGATCAAGTTGAGATTCCTGAGTATTTCATTTGCCCCATATCCCTCCAAATCATGAAAGATCCCGTTACTGCCGTTACAGGCATCACTTACGATCGTGAAAGCATCGAACGCTGGCTCTTCACCGCCAAGAACACAACATGCCCTGTCACCAAACAGACTCTGCCGTTAGACTCTGACCTGACCCCCAACCACACCCTTCGCCGCCTCATCCAGGCTTGGTGCTCTCAGAATGCCTCCCTCGGCGTCGATCGCATCCCCACACCCAAGCCTCCCCTCGACAAATTTCAGGTCCTCAAGATCCTCTCCCACCTTCGCAGCCCTCATTTGTATCTCAAGGCTCTCAGACAGTTAGAACTGCTCGCCGCCGAGAACGAGAGGAATAAGAAGTGTTTGGCGGAGGCTGGTGTTCCCAAAGCCATGGTCATGTTCGTTTTGGATTGTTTCCAGAAACGACGGATCCGCGAGGGCCTCGAAGAGGCTCTCAGTTTGTTGCAGTTTGTTAAAGTTCCGCCGGAAGAAATCAAGCTGCTTCTGCAGCAAAATGACCAGGTATTGTATTCTGTCACGTGGGTTTTAGGCTGTGAAATAATGGAGAACTCTGTGACTCTCAAGTCCCACGCGATTACGGTGCTCAAAACGATCATCCAGAAGGCCAGCTCCGGCGTTATGGAGAGGCTGAAACCTGAGTTCTTTAAAACAGTCGTGCGAGTCCTACGAAATGGAATAACCCTACAAGGGATGAACGCTGGCCTGAAAGTTCTTTTAGAAGCTTGTCCGTGGGCAAGAAATCGCCAGCTGATGGTGGAGGCTGGTGCAGTTCATGAGTTAATTGAGATTGAACTGGGGACGCCGGAGAAGAGAACGACGGAGCTCATATTAGGAATACAGTTTCATCTTTGTTCTTGTGCGAGTGGGAGAGCACAGTTCGTGAGCCACAGAGGCGGCATTGCGGTGTTGACGGAGAGAATATTGAAGGTCTCGCCGACGGCCGATGAAAGAGCCATATTTGTGCTGTCACTGGTATCAAAGTCATGTGCCTCGCAAATAGTAATCCAAGAGATGGTCCAGCTTGGGACTTTGTCAAAACTTTGCATGTTGCTTCAGGCCGATCATCCTTCGTATCTAAAAGAAAAGGCAATGGAGATACTCAAATCGCATTCTGAGGTTTGGAAGAACTCCCCTTGCTTTCCTGCATCTTTTAACGCAAGTTTGCACAGATGA 1224 0.4967 MDQVEIPEYFICPISLQIMKDPVTAVTGITYDRESIERWLFTAKNTTCPVTKQTLPLDSDLTPNHTLRRLIQAWCSQNASLGVDRIPTPKPPLDKFQVLKILSHLRSPHLYLKALRQLELLAAENERNKKCLAEAGVPKAMVMFVLDCFQKRRIREGLEEALSLLQFVKVPPEEIKLLLQQNDQVLYSVTWVLGCEIMENSVTLKSHAITVLKTIIQKASSGVMERLKPEFFKTVVRVLRNGITLQGMNAGLKVLLEACPWARNRQLMVEAGAVHELIEIELGTPEKRTTELILGIQFHLCSCASGRAQFVSHRGGIAVLTERILKVSPTADERAIFVLSLVSKSCASQIVIQEMVQLGTLSKLCMLLQADHPSYLKEKAMEILKSHSEVWKNSPCFPASFNASLHR 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1976g00003 407 PANTHER WDSAM1 PROTEIN 3 398 IPR045185 GO:0061630
Pral1976g00003 407 Coils Coil 115 135 - -
Pral1976g00003 407 SUPERFAMILY RING/U-box 3 82 - -
Pral1976g00003 407 Gene3D - 96 394 IPR011989 -
Pral1976g00003 407 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Pral1976g00003 407 FunFam RING-type E3 ubiquitin transferase 1 84 - -
Pral1976g00003 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Pral1976g00003 407 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Pral1976g00003 407 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Pral1976g00003 407 SUPERFAMILY ARM repeat 105 392 IPR016024 -
Pral1976g00003 407 CDD RING-Ubox_PUB 7 58 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1976g00003 Pral-Chr1976 19113 20679 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1976g00003 2 401 U-box Gene Family AT3G11840 43.820 4.49e-121 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1976g00003 - - rcu:8284313 539.65