Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1976g00002 ATGGACGAGAATATTGAAGTTCCTCCCTTCTTCTTGTGCCCCATCTCCTTGGAAATCATGAAGGATCCGATCACGGTTTCCTCTGGGATTACCTACGACCGTGAGAGCATCGAGAAATGGCTCTTCTCCGGCAAGAACAAGACGTGCCCGGTCACCAAACAACCCCTCTCCGTATCAGACTCCTCCGACCTCGTTCCCAACCACACCCTTCGTCGTCTGATTCAATCGTGGTGTACCATGAACGCTTCTCACGGCATCGAGAGGATCCCCACGCCCAAACCTCCCATCAACAAAACCCAAGTGGCTAAAATCATCAGAGATGCTTCTCGATCTTCTCAGTCACCGGTTAAATGCCTCCAAACACTCAAATCCATTGCCTCCGACAGCGACGCCAATAAACGCAGCATAGAAGCCGCGGGCGCCGTCGAATACCTAGCATCCATTGTACTCCGTCACACAAGTTTCTCCTACACACCTGAAGAAGCTAGCCCTGACGATGATGGATTTGAATTGAAAACAAGCGGAGGTGATGAAGCCTTGAGCATTCTCCATAGCCTCCGCCTGTCCGAGGCTGGCTTGAAGAGCCTCGTCAGCTTCGAAAACGGATCATTCATTGACTGCTTAACCAGAATCATGCAGAGGGGATTCTACGAGTCACGAGCTTATGCCGTCTTATTGTTAAAATCCATGTTCGAAGTGGCTGATCCATCGGTTTTATCCCATTTAAAACCAGAAATGTTCGTTGAATTAGTACAGCTATTGAAAGACCAGATATCCCAGCAAGCCTCGAAGGCTACTCTAAGAACACTGATCCAAACATGTCCTTGGGGAAGAAACAGAATAAGAGCAGTGGAAGCAGGAGGCGTATCGGTGTTGATAGAGCTTCTTCTAGATTGTAAAGACAGGAAGCCATGTGAGATGATGCTGGTGTTGTTGGAGATGCTGTGTGGGTGTGCTGAGGGGAGAGCCGAGCTACTGAGTCACGGGGCGGGGATCGCAATAGTTTCGAAGAAGATTCTGAGGGTGTCGACTATGGCCAACGATAGGGCGGCGAGGATTCTGCTGTCCATTGCCAAGTTCTCTGCAACCCCTAGCGTTTTGCAGGAAATGTTGCAGGTTGGGGTGGTGGCGAAGCTGTGTTTGGTGCTTCAAGTGGAGAGTGGGCGAAAGGCTCAGGACAAAGCCAGAGAGATTCTCAGAATGCACTCTCGGGCTTGGAGGAATTCTCCATGCATACCCAGCAGCTTGCTTTCTTCTTATCCGAATTGA 1269 0.5004 MDENIEVPPFFLCPISLEIMKDPITVSSGITYDRESIEKWLFSGKNKTCPVTKQPLSVSDSSDLVPNHTLRRLIQSWCTMNASHGIERIPTPKPPINKTQVAKIIRDASRSSQSPVKCLQTLKSIASDSDANKRSIEAAGAVEYLASIVLRHTSFSYTPEEASPDDDGFELKTSGGDEALSILHSLRLSEAGLKSLVSFENGSFIDCLTRIMQRGFYESRAYAVLLLKSMFEVADPSVLSHLKPEMFVELVQLLKDQISQQASKATLRTLIQTCPWGRNRIRAVEAGGVSVLIELLLDCKDRKPCEMMLVLLEMLCGCAEGRAELLSHGAGIAIVSKKILRVSTMANDRAARILLSIAKFSATPSVLQEMLQVGVVAKLCLVLQVESGRKAQDKAREILRMHSRAWRNSPCIPSSLLSSYPN 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1976g00002 422 FunFam RING-type E3 ubiquitin transferase 1 87 - -
Pral1976g00002 422 ProSiteProfiles U-box domain profile. 6 84 IPR003613 GO:0004842|GO:0016567
Pral1976g00002 422 CDD RING-Ubox_PUB 8 60 IPR045210 -
Pral1976g00002 422 Pfam U-box domain 7 81 IPR003613 GO:0004842|GO:0016567
Pral1976g00002 422 Gene3D - 99 409 IPR011989 -
Pral1976g00002 422 SUPERFAMILY RING/U-box 4 85 - -
Pral1976g00002 422 SUPERFAMILY ARM repeat 118 407 IPR016024 -
Pral1976g00002 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Pral1976g00002 422 SMART Ubox_2 10 77 IPR003613 GO:0004842|GO:0016567
Pral1976g00002 422 PANTHER WDSAM1 PROTEIN 4 413 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1976g00002 Pral-Chr1976 5233 23451 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1976g00002 1 421 U-box Gene Family AT2G35930 56.471 3.43e-174 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1976g00002 - - gmx:100811258 596.66