Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1971g00004 ATGGGTACTATGAATCCACAACCACTGCAAGCACGGCCTTTCGAGGACGGAGAACTGCAACTGGTGCAGGTTCCCATGCAGGTGGATGGTGTCGAAGATGGATTGAATGCTCAGTGTGTCAATGGACGTCGTGACGAGGTCAGTGACGGGGTAGAAGAAGCTCGGGTGAGTTCTGGGTTATCGGGGACAAATGGTTGTGCTTTCAAATCTCGAACCAGTGAACTCACCATTTCATTTGAAGGCGAGGTCTATGTCTTCCCAGCTGTTACGCCGGAAAAGGTACAGGCCGTATTGCTATTGTTGGGGTGTGAGATGTCCAGCCCCTGTAGTGCCCCCAGCGCTGATCTTTTGCTGCAACAGAACTATCAGAACATGATGGAAATTAACGATACTTCCCGGGGTTCAAAGCTTTCACGGAGATTTGCATCCCTTGTTAGGTTTAGGGAAAAGCGAAAAGAGAGATGTTTTGAGAAAAAAATTCGATACAGCTGCCGTAAAGAAGTTGCACAGAGGATGCATCGTAAGAATGGACAGTTTGCATCATCAAAGGAATGTGACAGTTCTGCTGCTGAAAACTGGGACTCTAGCAATGGTGCTGCTTGTTCAGAATCTAATGAACGCAAATGTCAGCATTGTGGAACTAGTGAAAAGTCTACTCCAGCAATGCGGCGAGGACCAGCTGGTCCAAGATCTCTCTGCAATGCTTGTGGGCTGATGTGGGCAAATAAGGGGACTCTGAGGGATCTCAGCAAAACAGGAAAGGTCTCTTCTTTGGAACAAAATGAACTGGATACTTCAGCTGAAAGGAAGCCTTCCATGACTACACCAGAAAATTCTTGTCCTGAGCAGAATGAGGAAGGAAGCCCCAAGGAGACAAAACCTGAGCTGTTGGAATCTGGACAGTCACCCAAGAGGGCGAATGGGCAGTATACACTTGAAACTGCCGAAGCAGTTACTGACAATTTATCCATTCAAGTGGAGAACCTTGATGTTAATCTGCATGAACAGGATACTCTTGAAGATCTCGCTGATGCATCTGGAACGGATTTTGAGATTCCTGCAGGTTTTGATGAGCAGTGTCTACCTGTATTTTCCGGTGGACGTTCTAGCTTGTGA 1116 0.4713 MGTMNPQPLQARPFEDGELQLVQVPMQVDGVEDGLNAQCVNGRRDEVSDGVEEARVSSGLSGTNGCAFKSRTSELTISFEGEVYVFPAVTPEKVQAVLLLLGCEMSSPCSAPSADLLLQQNYQNMMEINDTSRGSKLSRRFASLVRFREKRKERCFEKKIRYSCRKEVAQRMHRKNGQFASSKECDSSAAENWDSSNGAACSESNERKCQHCGTSEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLSKTGKVSSLEQNELDTSAERKPSMTTPENSCPEQNEEGSPKETKPELLESGQSPKRANGQYTLETAEAVTDNLSIQVENLDVNLHEQDTLEDLADASGTDFEIPAGFDEQCLPVFSGGRSSL 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1971g00004 371 ProSiteProfiles CCT domain profile. 140 182 IPR010402 GO:0005515
Pral1971g00004 371 CDD ZnF_GATA 208 251 IPR000679 GO:0006355|GO:0043565
Pral1971g00004 371 Pfam tify domain 71 102 IPR010399 -
Pral1971g00004 371 ProSiteProfiles GATA-type zinc finger domain profile. 203 261 IPR000679 GO:0006355|GO:0043565
Pral1971g00004 371 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 205 255 - -
Pral1971g00004 371 MobiDBLite consensus disorder prediction 251 283 - -
Pral1971g00004 371 PANTHER GATA TRANSCRIPTION FACTOR 28 5 351 IPR045280 GO:0006355
Pral1971g00004 371 ProSitePatterns GATA-type zinc finger domain. 209 236 IPR000679 GO:0006355|GO:0043565
Pral1971g00004 371 Gene3D - 200 262 IPR013088 GO:0006355|GO:0008270
Pral1971g00004 371 Pfam GATA zinc finger 209 245 IPR000679 GO:0006355|GO:0043565
Pral1971g00004 371 SMART tify_2 68 103 IPR010399 -
Pral1971g00004 371 MobiDBLite consensus disorder prediction 251 309 - -
Pral1971g00004 371 Pfam CCT motif 140 182 IPR010402 GO:0005515
Pral1971g00004 371 ProSiteProfiles Tify domain profile. 68 103 IPR010399 -
Pral1971g00004 371 SMART GATA_3 203 256 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1971g00004 Pral-Chr1971 144033 155308 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1971g00004 74 251 Tify Gene Family AT1G51600 55.080 4.77e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pral1971g00004 CCT 5.8e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1971g00004 - - gmx:102669848 446.432