Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1971g00003 ATGGGTACTATGAATCCACAACCACTGCAAGCACGGCCTTTCGAGGACGGAGAACTGCAACTGGTGCAGGTTCCCATGCAGGTGGATGGTGTCGAAGATGGATTGAATGCTCAGTGTGTCAATGGACGTCGTGACGAGGTCAGTGACGGGGTAGAAGAAGCTCGGGTGAGTTCTGGGTTATCGGGGACAAATGGTTGTGCTTTCAAATCTCGAACCAGTGAACTCACCATTTCATTTGAAGGCGAGGTCTATGTCTTCCCAGCTGTTACGCCGGAAAAGGTACAGGCCGTATTGCTATTGTTGGGGTGTGAGATGTCCAGCCCCTGTAGTGCCCCCAGCGCTGATCTTTTGCTGCAACAGAACTATCAGAACATGATGGAAATTAACGATACTTCCCGGGGTTCAAAGCTTTCACGGAGATTTGCATCCCTTGTTAGGTTTAGGGAAAAGCGAAAAGAGAGATGTTTTGAGAAAAAAATTCGATACAGCTGCCGTAAAGAAGTTGCACAGAGGATGCATCGTAAGAATGGACAGTTTGCATCATCAAAGGAATGTGACAGTTCTGCTGCTGAAAACTGGGACTCTAGCAATGGTGCTGCTTGTTCAGAATCTAATGAACGCAAATGTCAGCATTGTGGAACTAGTGAAAAGTCTACTCCAGCAATGCGGCGAGGACCAGCTGGTCCAAGATCTCTCTGCAATGCTTGTGGGCTGATGTGGGCAAATAAGGGGACTCTGAGGGATCTCAGCAAAACAGGAAAGGTCTCTTCTTTGGAACAAAATGAACTGGATACTTCAGCTGAAAGGAAGCCTTCCATGACTACACCAGAAAATTCTTGTCCTGAGCAGAATGAGGAAGGAAGCCCCAAGGAGACAAAACCTGAGCTGTTGGAATCTGGACAGTCACCCAAGAGGGCGAATGGGCAGTATACACTTGAAACTGCCGAAGCAGTTACTGACAATTTATCCATTCAAGTGGAGAACCTTGATGTTAATCTGCATGAACAGGATACTCTTGAAGATCTCGCTGATGCATCTGGAACGGATTTTGAGATTCCTGCAGGTTTTGATGAGCAGATTGACATTGATGATTCCAACTTGAAGACCTACTGGTTATGA 1119 0.4674 MGTMNPQPLQARPFEDGELQLVQVPMQVDGVEDGLNAQCVNGRRDEVSDGVEEARVSSGLSGTNGCAFKSRTSELTISFEGEVYVFPAVTPEKVQAVLLLLGCEMSSPCSAPSADLLLQQNYQNMMEINDTSRGSKLSRRFASLVRFREKRKERCFEKKIRYSCRKEVAQRMHRKNGQFASSKECDSSAAENWDSSNGAACSESNERKCQHCGTSEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLSKTGKVSSLEQNELDTSAERKPSMTTPENSCPEQNEEGSPKETKPELLESGQSPKRANGQYTLETAEAVTDNLSIQVENLDVNLHEQDTLEDLADASGTDFEIPAGFDEQIDIDDSNLKTYWL 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1971g00003 372 ProSiteProfiles CCT domain profile. 140 182 IPR010402 GO:0005515
Pral1971g00003 372 CDD ZnF_GATA 208 251 IPR000679 GO:0006355|GO:0043565
Pral1971g00003 372 ProSiteProfiles GATA-type zinc finger domain profile. 203 261 IPR000679 GO:0006355|GO:0043565
Pral1971g00003 372 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 205 255 - -
Pral1971g00003 372 MobiDBLite consensus disorder prediction 251 283 - -
Pral1971g00003 372 PANTHER GATA TRANSCRIPTION FACTOR 28 5 351 IPR045280 GO:0006355
Pral1971g00003 372 ProSitePatterns GATA-type zinc finger domain. 209 236 IPR000679 GO:0006355|GO:0043565
Pral1971g00003 372 Pfam CCT motif 140 182 IPR010402 GO:0005515
Pral1971g00003 372 MobiDBLite consensus disorder prediction 251 306 - -
Pral1971g00003 372 Gene3D - 200 262 IPR013088 GO:0006355|GO:0008270
Pral1971g00003 372 Pfam GATA zinc finger 209 245 IPR000679 GO:0006355|GO:0043565
Pral1971g00003 372 SMART tify_2 68 103 IPR010399 -
Pral1971g00003 372 Pfam tify domain 71 102 IPR010399 -
Pral1971g00003 372 ProSiteProfiles Tify domain profile. 68 103 IPR010399 -
Pral1971g00003 372 SMART GATA_3 203 256 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1971g00003 Pral-Chr1971 143711 155308 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1971g00003 74 251 Tify Gene Family AT1G51600 55.080 3.68e-59 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pral1971g00003 CCT 5.8e-14 CL0281