Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1971g00001 ATGGGAAAACCTTCCTCCTTTGTCTTCCTCATCATCTTGCTTCTTTGCTTTACAGTCACCTTAGCTTCCATTCATACAAACATCAATACTGACAAATTTGCACTTCTTAATCTTAAGTCCTTTATCACCTCTGATCCATATGATTTTTTAGCTAATTGGTCTGTCTCTTCTAGTCCATGCAGCTGGGCTGGTATCACATGCAATAATCGGCATGGAAGGGTCCATTCTGTGAATCTTAGCAGCATGGAACTTAAGGGCACCATATCTCCACAACTAGGAAATCTCTCATTCCTTGTTGAACTTGATCTCAATGAAAACAACTTTCATGGTCAGATCCCACAAGACTTGGTTCGATTACGTCGATTGAGACTACTCAATTTGAGCTATAATGACTTTCATGGACAAGTTCCAACATGGATAGGAGATTTAACTATGCTTGAGCACTTAAGTTTTCAAAATAACAGTCTCAACGGATTTATTCCATTATCTCTGTTCAATCTATCAAGGTTAGAGACTTTAGATTGGAATTCCAATCTCATTGAAGGTACCATTCCACCAGAGATAGGAAGTCTAAAGCACTTGAAGAAGTTACAACTTTCAAGGAACAAACTTTCAGGAGCAATTCCCCAAACAGTTTCCAACTTGTCTTCGCTTGAGTTGCTTTGGTTGTCTCATAATAATTTGTCAGGGAGCATCCCAAATGAGATTGGGGATCTTTCACAACTGAAGAAATTGTATCTTGGAAATAATGAACTTGTGGGTTCTATACCATCTTCATTATTTAACAGTTCAATGCTACAAGACTTCCAACTTGGAGTAAATAACTTATCTGGAAGTCTCCCAATAAATGTGTGTGTTGGGCTTCCAAAGCTACAAATATTTTTTGTGGATGGAAATGATTTGTCTGGCAAAATACCCTCCACTTGGCATCAATGCACAGAATTATTAAAATTACAATTGGGGTATAACAAATTCAACGGAGGAAACATACCAATTAACATCGGAAATCTGACCAACCTCCGGAGGCTATATCTTTCCGACAGCAACTTGCAAGGAATCATTCCAAGTGAGTTTGGAAATTTGACAAACCTCCAAGCCCTTGAGCTTGGCGAGAACATTTTGCAAGGAGTCATTCCAAGTGAGATTGGAAATTTGACAAACCTTGAAATCCTTATTCTTCGCGACAACAATTTGCAAGGTTTTATACCCAAGGACATAGGCAGTCTTGTTAAACTTGAAGTCTTAGATTTGGGATCAAATCATTTGAGCGGACCTATTCCTTTCAGTGTATTCTCCATTTCAACATTGAAACACTTACACCTTGGCAATAACTCCCTCTCTGGTGTTCTCCCATCATATTTAGGGATTGGCCTTCCCAACTTGGAGCAATTACTACTGTCTCAAAATGAGCTGATTGGACAAATTCCAAACACCATATCAAATGTTTCTAAGCTCATTAGGTTAGATTTATCATTGAATAAATTTAACGGAGCTATACCCAATGTCATTGGAAATTTAACAAACTTGTTCGACTTAACTTTGAATGGGAATGATTTGAATGGATTGATTCCAAACACAATCAGAAACTTACATAAGCTTCAACGTTTAAGTCTCAGCAACAACAGATTGCAAGGTGCCATTATAGACGAACTTTGCCTGCTCAAAAGTCTAAGTGAGTTGGATCTTGCTAACAACATGTTTTCAGGAGTGGTTCCCAGATGTCTCGGGAATACTTCTTTGCGAAACTTGAATTTTAGCTTCAACAAATTGATTTCTCATATGCCCTATTCTCTTTGGAGTCTTAAAGATATTTTGATTTTAGACATATCCTCCAATGCATTGAGTGGATCAATTTCACCAGAGGTATCAAACTTGGGAGCAATTATACTATTGAACTTGTCAAGAAACCAAATTTCAGGAAGCATTCCTGCAACTATGGGTGGTTTGCAAAACTTGCTAACCCTCTCTTTGGCTCACAACAAATTACGAGGGTCTATTCCTAAATCATTTAGCAGCATGATAAGCATAGAGTCTATGGATCTTTCCCATAATTATTTGTCTGGTGTGATTCCAAAGTCCTTAGAGTCATTACTCAATCTTAAATACATCAATCTTTCCTACAATTTATTGGATGGAGAAATTCCAAATGGTGGTCCTTTTCAAAATTTTACTGCTCAATCTTTTACAATGAATAAAGACCTCTGTGGAAAACCCCAACTACAAGTCCAACCATGTAGGAGAGGAAACAAGCACATATTAAATAAAGTGATACTGGTTATAAAATGCTTAGTACCTATCATGGTTGTCATTTTGGTTGTTATAGGCATTGTCTTTCTAAAGCATAACAGAGATGATGCTAACTATGCAACACGAAGGGATTTAACAAATTTAGATGCACCACCTAGGATATCTTATTATGAGCTTCTACAGGGAACAAATGGATATGATGAAAGTAATCTTCTTGGCTCTGGAAGTTTTGGATCAGTATACAAAGCAGTTCTTCTAAATGAAAAGATTGTTGCTGTCAAAGTATTTAACATAGACATGGAAGAAGCATTGAGAAGTTTTGATATTGAATGTGCTGCCATGTGCAATTTACGCCACCGTAATCTCATCAAGATTATTAGTAGTTGCTCAAATGATCATTTCAAGTCTCTAATCATGGAATTCATGTCCAATGGAAGTCTTGATAGATGGTTGTACTCTCATAACTACTATTTAGATATCCTACAAAGATTGAATATAATGGTTGATGTGGCAGTTGCATTAGAGTATCTTCATCATGGTACTTCTACTCCGATTGTTCATTGTGACATAAAACCAAGTAATGTTTTGTTGGATGAAGATATGGTGGCTCATCTAAGTGATTTTGGTATAGCTAAACTATTAGGTGAAGGACAATTGGAAACTTACACAAAAACAATGGCTACAATTGGCTATATGGCACCAGAGTATGGATCAAAAGGAGCGGTTTCTTTCAAGGGAGATGTGTATAGCTATGGTATCATGCTAATGGAGATGTTTACAAGGAAGAAGCCAACTGATGAACTGTTTGTTGAAGGTCTTGGTTTGAAAGAGTGGGTCAGCAAATCAACACCACATTCAATTATCAATATTCTAGATGTCAATTTGCTACGTGAAGGGGATCCAAATATCAACAATATATTACCACAAATATCATCAATTTTTGAGTTGGCATTAAGTTGTTGTATTGAATTACCTAAGGCACGAATTATGATGACAGATGTTGTGGTCTCATTGAAAAAGATAAGGTCACATTTACCTAAGATGTTAGAGATGCACCACTAG 3309 0.3687 MGKPSSFVFLIILLLCFTVTLASIHTNINTDKFALLNLKSFITSDPYDFLANWSVSSSPCSWAGITCNNRHGRVHSVNLSSMELKGTISPQLGNLSFLVELDLNENNFHGQIPQDLVRLRRLRLLNLSYNDFHGQVPTWIGDLTMLEHLSFQNNSLNGFIPLSLFNLSRLETLDWNSNLIEGTIPPEIGSLKHLKKLQLSRNKLSGAIPQTVSNLSSLELLWLSHNNLSGSIPNEIGDLSQLKKLYLGNNELVGSIPSSLFNSSMLQDFQLGVNNLSGSLPINVCVGLPKLQIFFVDGNDLSGKIPSTWHQCTELLKLQLGYNKFNGGNIPINIGNLTNLRRLYLSDSNLQGIIPSEFGNLTNLQALELGENILQGVIPSEIGNLTNLEILILRDNNLQGFIPKDIGSLVKLEVLDLGSNHLSGPIPFSVFSISTLKHLHLGNNSLSGVLPSYLGIGLPNLEQLLLSQNELIGQIPNTISNVSKLIRLDLSLNKFNGAIPNVIGNLTNLFDLTLNGNDLNGLIPNTIRNLHKLQRLSLSNNRLQGAIIDELCLLKSLSELDLANNMFSGVVPRCLGNTSLRNLNFSFNKLISHMPYSLWSLKDILILDISSNALSGSISPEVSNLGAIILLNLSRNQISGSIPATMGGLQNLLTLSLAHNKLRGSIPKSFSSMISIESMDLSHNYLSGVIPKSLESLLNLKYINLSYNLLDGEIPNGGPFQNFTAQSFTMNKDLCGKPQLQVQPCRRGNKHILNKVILVIKCLVPIMVVILVVIGIVFLKHNRDDANYATRRDLTNLDAPPRISYYELLQGTNGYDESNLLGSGSFGSVYKAVLLNEKIVAVKVFNIDMEEALRSFDIECAAMCNLRHRNLIKIISSCSNDHFKSLIMEFMSNGSLDRWLYSHNYYLDILQRLNIMVDVAVALEYLHHGTSTPIVHCDIKPSNVLLDEDMVAHLSDFGIAKLLGEGQLETYTKTMATIGYMAPEYGSKGAVSFKGDVYSYGIMLMEMFTRKKPTDELFVEGLGLKEWVSKSTPHSIINILDVNLLREGDPNINNILPQISSIFELALSCCIELPKARIMMTDVVVSLKKIRSHLPKMLEMHH 1102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1971g00001 1102 Gene3D Ribonuclease Inhibitor 26 177 IPR032675 -
Pral1971g00001 1102 Gene3D Ribonuclease Inhibitor 456 746 IPR032675 -
Pral1971g00001 1102 SMART LRR_sd22_2 361 387 - -
Pral1971g00001 1102 SMART LRR_sd22_2 143 164 - -
Pral1971g00001 1102 SMART LRR_sd22_2 649 670 - -
Pral1971g00001 1102 SMART LRR_sd22_2 409 430 - -
Pral1971g00001 1102 SMART LRR_sd22_2 458 484 - -
Pral1971g00001 1102 SMART LRR_sd22_2 554 585 - -
Pral1971g00001 1102 SMART LRR_sd22_2 239 262 - -
Pral1971g00001 1102 SMART LRR_sd22_2 530 553 - -
Pral1971g00001 1102 SMART LRR_sd22_2 191 217 - -
Pral1971g00001 1102 SUPERFAMILY Protein kinase-like (PK-like) 795 1087 IPR011009 -
Pral1971g00001 1102 PANTHER OS04G0122200 PROTEIN 237 327 - -
Pral1971g00001 1102 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Pral1971g00001 1102 Gene3D Phosphorylase Kinase; domain 1 798 890 - -
Pral1971g00001 1102 Pfam Leucine rich repeat 193 252 IPR001611 GO:0005515
Pral1971g00001 1102 Pfam Leucine rich repeat 338 398 IPR001611 GO:0005515
Pral1971g00001 1102 Pfam Leucine rich repeat 631 686 IPR001611 GO:0005515
Pral1971g00001 1102 FunFam Leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1 30 138 - -
Pral1971g00001 1102 ProSiteProfiles Protein kinase domain profile. 815 1102 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1971g00001 1102 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 139 232 - -
Pral1971g00001 1102 Gene3D Transferase(Phosphotransferase) domain 1 891 1099 - -
Pral1971g00001 1102 SUPERFAMILY RNI-like 342 716 - -
Pral1971g00001 1102 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 233 328 - -
Pral1971g00001 1102 Pfam Leucine Rich Repeat 436 454 IPR001611 GO:0005515
Pral1971g00001 1102 SUPERFAMILY L domain-like 29 325 - -
Pral1971g00001 1102 Gene3D Ribonuclease Inhibitor 285 455 IPR032675 -
Pral1971g00001 1102 ProSitePatterns Serine/Threonine protein kinases active-site signature. 934 946 IPR008271 GO:0004672|GO:0006468
Pral1971g00001 1102 SMART LRR_typ_2 95 119 IPR003591 -
Pral1971g00001 1102 SMART LRR_typ_2 409 433 IPR003591 -
Pral1971g00001 1102 SMART LRR_typ_2 530 553 IPR003591 -
Pral1971g00001 1102 SMART LRR_typ_2 143 167 IPR003591 -
Pral1971g00001 1102 SMART LRR_typ_2 191 214 IPR003591 -
Pral1971g00001 1102 SMART LRR_typ_2 239 263 IPR003591 -
Pral1971g00001 1102 SMART LRR_typ_2 649 672 IPR003591 -
Pral1971g00001 1102 SMART LRR_typ_2 697 721 IPR003591 -
Pral1971g00001 1102 SMART LRR_typ_2 337 360 IPR003591 -
Pral1971g00001 1102 SMART LRR_typ_2 385 408 IPR003591 -
Pral1971g00001 1102 SMART LRR_typ_2 215 238 IPR003591 -
Pral1971g00001 1102 SMART LRR_typ_2 458 482 IPR003591 -
Pral1971g00001 1102 SMART LRR_typ_2 554 577 IPR003591 -
Pral1971g00001 1102 SMART LRR_typ_2 673 696 IPR003591 -
Pral1971g00001 1102 SMART LRR_typ_2 506 529 IPR003591 -
Pral1971g00001 1102 SMART serkin_6 815 1096 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1971g00001 1102 Gene3D Ribonuclease Inhibitor 178 284 IPR032675 -
Pral1971g00001 1102 Pfam Protein kinase domain 815 1082 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1971g00001 1102 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 891 1099 - -
Pral1971g00001 1102 ProSiteProfiles Leucine-rich repeat profile. 217 239 IPR001611 GO:0005515
Pral1971g00001 1102 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 460 749 - -
Pral1971g00001 1102 FunFam Leucine-rich repeat receptor protein kinase EMS1 354 453 - -
Pral1971g00001 1102 ProSitePatterns Protein kinases ATP-binding region signature. 821 843 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1971g00001 Pral-Chr1971 51036 74192 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1971g00001 6 1091 Receptor kinase-like Gene Family AT5G46330 33.792 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Pral1971g00001 Pkinase 3.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1971g00001 - K13420 pcin:129285519 1078.93