Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1970g00002 ATGACGACTAGAATAGCGCCCGGTGTAGGGGCAAACTTGCTGGGTCAACACTCCGCGGAGAGGAATCAAGATGCTACTGCTTATGTTGGCAATCTCGACCCCCAGGTGTCCGAGGAGTTACTATGGGAGCTATTTGTTCAGGCAGGTCCAGTTGTTAATGTCTATGTTCCCAAAGACAGAGTGACTAACCAACATCAAGGTTATGGTTTTGTTGAATTCCGGAGCGAAGAAGATGCTGACTATGCCATCAAGGTTCTTAATATGATTAAGCTTTATGGAAAACCAATACGTGTAAATAAGGCTTCCCAAGACAAAAAGAGCTTGGATGTGGGAGCAAACCTTTTCATTGGAAACCTTGATCCTGATGTGGATGAGAAACTCTTGTATGATACGTTTAGTGCCTTTGGAGTAATTGTTACTAATCCCAAGATCATGAGAGATCCTGAAACAGGAAATTCCCGTGGATTTGGTTTCATTAGCTACGATTCATTTGAGGCATCTGATTCAGCTATTGAGGCAATGAATGGACAATATCTTTGCAATCGTCAAATAACAGTGTCTTATGCATACAAGAAAGACACCAAAGGGGAAAGGCACGGCACTCCAGCAGAAAGAGTTCTGGCTGCCAGCAATCCAAGCGCCCAGAAAAGCAGGCCTCACACGTTGTTTGCCAGCGGACCTCCAACACTGCCCAATGTTCCTCAGGCTAATGGTGCCATCGCTGCTCAGCCTCCTCGTCCCTATGCTAATGGAGTTGCTCCCCCTGCTATTCCCGCTCTTCGACCGCCACCTCCTCAAGCTGCACCATTTCCACCTATGCCAGTAGCCCCTCAACAAGCATGGCATCAGCAGCAACCAGGTCAATCAATTCCACCGCCTGTAATGCCTCCGCCTCCAATCCAGCAGCAGTTCAGGCCACCTCACTCGAGTATGCCACCCCCTCCTCCTCCGCAAGCCATACCAGCTCCCCCAAGGCCTCTTCCACCACCAGCTGCAATGACAGGCCAGCAACCTGTTTGGCGTCCACCGCCACCGCCTCCACCACAGCAACAGGGCATGCGGCCCCCTTCATTTCCTCAATCCTCCATGCCGCCGCCGCCTCCTCCGAGTTGA 1113 0.5067 MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPSAQKSRPHTLFASGPPTLPNVPQANGAIAAQPPRPYANGVAPPAIPALRPPPPQAAPFPPMPVAPQQAWHQQQPGQSIPPPVMPPPPIQQQFRPPHSSMPPPPPPQAIPAPPRPLPPPAAMTGQQPVWRPPPPPPPQQQGMRPPSFPQSSMPPPPPPS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1970g00002 370 CDD RRM1_SF3B4 28 100 IPR034158 -
Pral1970g00002 370 MobiDBLite consensus disorder prediction 194 370 - -
Pral1970g00002 370 CDD RRM2_SF3B4 111 193 IPR034159 -
Pral1970g00002 370 PANTHER SPLICING FACTOR 3B SUBUNIT 4 14 364 - -
Pral1970g00002 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Pral1970g00002 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Pral1970g00002 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Pral1970g00002 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Pral1970g00002 370 MobiDBLite consensus disorder prediction 248 276 - -
Pral1970g00002 370 FunFam Splicing factor 3b subunit 4 16 108 - -
Pral1970g00002 370 Gene3D - 112 200 IPR012677 -
Pral1970g00002 370 MobiDBLite consensus disorder prediction 289 370 - -
Pral1970g00002 370 SMART rrm1_1 26 99 IPR000504 GO:0003723
Pral1970g00002 370 SMART rrm1_1 113 187 IPR000504 GO:0003723
Pral1970g00002 370 FunFam splicing factor 3B subunit 4 109 200 - -
Pral1970g00002 370 MobiDBLite consensus disorder prediction 208 232 - -
Pral1970g00002 370 Gene3D - 16 111 IPR012677 -
Pral1970g00002 370 SUPERFAMILY RNA-binding domain, RBD 25 194 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1970g00002 Pral-Chr1970 28406 34888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1970g00002 18 198 Eukaryotic Initiation Factors Gene Family AT4G34110 29.293 1.02e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1970g00002 K12831 - gmx:100791039 537.339