Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1967g00005 ATGGCTCTGCTCTGTGGTTCATCTTCAGTGACGTTCCTTTCATCTTCTGCTAAATCTTCCTATGCTTCTTCCCACAATGGGAATGCCAAAACCGCATTTCTTGGCTTCCAGTTGCCATCACCAAAGCCTTCTATACGGACCAATTTGCGCCTCAATTCTAGGGCAAGTTCTCGGGTGCGTTGCCAGGACCTCTCCATTGTCCCTAAAGATGAACGTTGGATGTTCGAGGAGTCCGAAGTCAATGGCCCGGACATTTGGAACAAGACTTGGTATCCAAAAGCAGCAGATCATGTTAACACAGATAAACAATGGTACATTGTTGATGCTACAGATAAAATTCTTGGAAGACTAGCTTCAACTATTGCAATTCACATCCGAGGGAAAAATTTGGCAACCTATACTCCCAGTGTGGACATGGGTGCATTTGTAGTTGTGGTTAATGCGGAAAAAATTGCTGTATCTGGAAAAAAGAGGACCCAAAAGCTTTACAGGAGGCATTCAGGACGACCTGGTGGTATGAAAGTAGAGACATTTGCCCAACTACAGGCGAGAATTCCAGAAAGAATTATTGAACATGCTGTTCGTGGCATGCTTCCAAAGGGGAGGCTTGGCAGACAGCTGTTCACCCACCTAAAGGTTTATAAGGGCCCCGATCATCCTCATCAGGCCCAAAAGCCCATCGAGTTACCAATAAGGGACAAAAGAATACAAAGGCAGAGATAG 723 0.4537 MALLCGSSSVTFLSSSAKSSYASSHNGNAKTAFLGFQLPSPKPSIRTNLRLNSRASSRVRCQDLSIVPKDERWMFEESEVNGPDIWNKTWYPKAADHVNTDKQWYIVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAFVVVVNAEKIAVSGKKRTQKLYRRHSGRPGGMKVETFAQLQARIPERIIEHAVRGMLPKGRLGRQLFTHLKVYKGPDHPHQAQKPIELPIRDKRIQRQR 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1967g00005 240 Hamap 50S ribosomal protein L13 [rplM]. 104 230 IPR005822 GO:0003735|GO:0005840|GO:0006412
Pral1967g00005 240 NCBIfam 50S ribosomal protein L13 98 229 IPR005823 GO:0003735|GO:0005840|GO:0006412
Pral1967g00005 240 FunFam 50S ribosomal protein L13 87 231 - -
Pral1967g00005 240 Gene3D Ribosomal protein L13 93 236 IPR036899 GO:0003735|GO:0005840|GO:0006412
Pral1967g00005 240 SUPERFAMILY Ribosomal protein L13 98 232 IPR036899 GO:0003735|GO:0005840|GO:0006412
Pral1967g00005 240 ProSitePatterns Ribosomal protein L13 signature. 194 216 IPR023563 GO:0003735|GO:0005840|GO:0006412
Pral1967g00005 240 CDD Ribosomal_L13 104 217 IPR005822 GO:0003735|GO:0005840|GO:0006412
Pral1967g00005 240 Pfam Ribosomal protein L13 102 220 IPR005822 GO:0003735|GO:0005840|GO:0006412
Pral1967g00005 240 PANTHER RIBOSOMAL PROTEIN L13 90 238 IPR005822 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1967g00005 Pral-Chr1967 22434 26268 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1967g00005 106 230 Cytoplasmic Ribosomal Protein Gene Family AT3G07110 31.818 3.77e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1967g00005 K02871 - qsa:O6P43_001091 409.453