Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1965g00001 ATGGAGCTGTCAACTCTCTGTGATGCTGAGATTGCTCTCTTAGTATTTTCAGCTTCGGGCAAACTCTTTGATTATGCCAGTACAAGCACGAGGCAAGTGATTGCAAGGAGAAACCTGTACTCAGATGTAAGCCTTCTCAACACATACCAACCACTTCTTGAGTTTCAGGTAGAAGGTGAATATTTTAAGCTAGACAAGGAACTGAGAGAGAAGACTCGTGAACTGAGGCAGCTAAATGGAGAAGAACTTCAAGGATTGACTATAAAAGATCTAAAGAAGCTAGAAGATCTACTTAGCACATGCTTGCATCGTGTTTCGAAAGCCAAGGCTGAAGCAATGAAGCAGGACATCAGTATTCTTAAGAAAGAGGTTCAAAGGCTTGAGCAGGATCAAGACCAATCATTGTCCACCTCTCTCACAACGAGGTTACTCTTTACTTGA 441 0.4218 MELSTLCDAEIALLVFSASGKLFDYASTSTRQVIARRNLYSDVSLLNTYQPLLEFQVEGEYFKLDKELREKTRELRQLNGEELQGLTIKDLKKLEDLLSTCLHRVSKAKAEAMKQDISILKKEVQRLEQDQDQSLSTSLTTRLLFT 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1965g00001 146 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 125 - -
Pral1965g00001 146 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 1 25 IPR002100 GO:0003677|GO:0046983
Pral1965g00001 146 SUPERFAMILY SRF-like 1 56 IPR036879 GO:0003677|GO:0046983
Pral1965g00001 146 Coils Coil 61 81 - -
Pral1965g00001 146 Coils Coil 91 130 - -
Pral1965g00001 146 ProSiteProfiles K-box domain profile. 54 145 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral1965g00001 146 Gene3D - 1 47 IPR036879 GO:0003677|GO:0046983
Pral1965g00001 146 ProSiteProfiles MADS-box domain profile. 1 29 IPR002100 GO:0003677|GO:0046983
Pral1965g00001 146 Pfam K-box region 57 132 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1965g00001 Pral-Chr1965 19545 32898 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1965g00001 2 127 MADS-box Gene Family AT2G22540 43.750 8.83e-28 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral1965g00001 K-box 3.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1965g00001 - - pcin:129285682 171.785