LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral1964g00010	ATGGTTTTCATAGGGGCATTGTTCATCTTCTTACTTCAATACCCAGCTTCAACATGCAGTCTCACCCATCCAAGGCATCACCACTTTTCTCACTCTCTTCTCACAGATAAGGCTGCTCTTCTGGAATTCAAGAAAACCATCATATTTGATCCACATTCCACACTCTCTAACTGGGATGAAGCTGTTCATGTGTGTAATTTCACAGGTGTTAAATGCGATAAATTTCAGCACCGAGTTACTGAACTAATCCTGACTGAAACTCATCTTGTGGGGTTGCTTTCACCCTTCCTTTCCAATCTCACTGGACTGCACATCCTTGACATAGTTGACAATTACTTATTTGGCATTATCCCACCAGAACTATCCTCTCTTAGACGTCTCCATCGGCTCCATCTAGAGGGGAACAATTTGCATGGTTCCATACCAGACTCCTTTTCCCAGCTTTCTAAACTTAACGTGCTGCACATCAAAGACAGTAACATGAGTGGTTCACTTTCTCCATCTCTTTTCTCCAATTGCACACTGGAAATTGTGGACCTTTCTAGCAACTTCCTCAATGGTAAGATCCCAGAGGAGATTGGAAACTGCCCAGGTCTGTGGAGTCTCAATCTATACAACAATCAATTTACTGGACAGATTCCTCTCTCTCTTACTAATCTGTCACTTGTAAACTTAGATGTAGAGTACAATCTATTGTCTGGAGAATTGCCCTCAGAGTTTCCAAGCAGCTGTTCTGATCTTCTTTACCTACATTTGTCATACAACCATCTGGGCACTGAGCTAGATGGAAAACCAGCTAGACGTGAACTGATAAGCAACTTCCCAAGAATCACATACAAGGAACTGTCGGAGGCCACTGGAGGATTTGATGATCAGAGACAAGTAGGATCAGGTAGCTATGGACACGTCTATAGAGGCGTTCTTCCAGATGGAACCCCAATAGCAGTCAAAGTGCTGCATTTGAAGTCTGGAAATTCCACCAAGAGCTTCAATAGAGAATGCCAAGTTTTAAAGAGGATTCGACACAGGAACCTGATAAGAATTATCACTGCATGTAGTCTACCTGATTTTAAAGCTCTTGTTTTGCCTTATATGGCCAAGGGGAGTTTGGAGAGCCGTCTCTATGCTTCTCCTGGATCTTCTGACCTGAGTATCATCCAGAGGGTGTATATTTGCAGCGACATCGCTGAAGGGTTGGCCTATCTGCATCATCATTCTCCAGTCAAAGTCATTCATTGTGATCTAAAACCAAGCAATGTTCTTCTTAATGATGACATGACAGCTGTAGTTTCGGATTTCGGGATTGCAAGGTTAATTATGAGTGTGGGAGGAGGAAATACTGGGTTTAATGATAACATGGGAAGCTCCACTACTAATTTATTATGTGGATCTACCGGATACATTGCACCAGAGTACGGATTTGGATCAAATACATCTACAAAAGGAGATGTGTACAGCTTCGGTATTCTTGTTCTTGAGATGGTGACTAGAAAAAGACCAACAGATGACATGTTTTCTAGAGGCTTGAGCCTTCACCAATGGGTAAAAATTCATTATCATGGGAGGTTAGAAAATGTGATAGACCCTGCTGTTGTTACTGCTTCAAGAGATCAGTCAGAGGAGGTGAAAAGAATGTGGGAAGTTGCAGTTGTAGAGTTAATTGAGCTGGGGATCCTTTGCACACAGGAATCACCTTCTACAAGGCCTAGCATGCTTGATGTAGCAGATGACTTGGATCGTCTCAAGGGATACCTTACTGGGGACACAACTAGAACTTTTGCCTCGTCTCTCGGAATTTTAACTTCTACAAGGCCTAGCATGCTTGATGTAGCAGATGACTTGGATCGTCTCAAGAGATACCTTACTGGGGACACAACTGGAACTTTTGCCTCGTCTCTTGGAATTTTAACTTCTACTACAGATGATTTTTAA	1932	0.4249	MVFIGALFIFLLQYPASTCSLTHPRHHHFSHSLLTDKAALLEFKKTIIFDPHSTLSNWDEAVHVCNFTGVKCDKFQHRVTELILTETHLVGLLSPFLSNLTGLHILDIVDNYLFGIIPPELSSLRRLHRLHLEGNNLHGSIPDSFSQLSKLNVLHIKDSNMSGSLSPSLFSNCTLEIVDLSSNFLNGKIPEEIGNCPGLWSLNLYNNQFTGQIPLSLTNLSLVNLDVEYNLLSGELPSEFPSSCSDLLYLHLSYNHLGTELDGKPARRELISNFPRITYKELSEATGGFDDQRQVGSGSYGHVYRGVLPDGTPIAVKVLHLKSGNSTKSFNRECQVLKRIRHRNLIRIITACSLPDFKALVLPYMAKGSLESRLYASPGSSDLSIIQRVYICSDIAEGLAYLHHHSPVKVIHCDLKPSNVLLNDDMTAVVSDFGIARLIMSVGGGNTGFNDNMGSSTTNLLCGSTGYIAPEYGFGSNTSTKGDVYSFGILVLEMVTRKRPTDDMFSRGLSLHQWVKIHYHGRLENVIDPAVVTASRDQSEEVKRMWEVAVVELIELGILCTQESPSTRPSMLDVADDLDRLKGYLTGDTTRTFASSLGILTSTRPSMLDVADDLDRLKRYLTGDTTGTFASSLGILTSTTDDF	643

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral1964g00010	643	Gene3D	Phosphorylase Kinase; domain 1	270	364	-	-
	Pral1964g00010	643	SUPERFAMILY	Protein kinase-like (PK-like)	270	578	IPR011009	-
	Pral1964g00010	643	ProSitePatterns	Protein kinases ATP-binding region signature.	295	317	IPR017441	GO:0005524
	Pral1964g00010	643	PANTHER	LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1	275	579	-	-
	Pral1964g00010	643	Pfam	Protein kinase domain	290	573	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral1964g00010	643	Gene3D	Transferase(Phosphotransferase) domain 1	365	595	-	-
	Pral1964g00010	643	FunFam	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase	269	364	-	-
	Pral1964g00010	643	FunFam	LRR receptor-like serine/threonine-protein kinase ERECTA	171	261	-	-
	Pral1964g00010	643	Gene3D	Ribonuclease Inhibitor	35	152	IPR032675	-
	Pral1964g00010	643	ProSiteProfiles	Protein kinase domain profile.	289	585	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral1964g00010	643	CDD	STKc_IRAK	295	581	-	-
	Pral1964g00010	643	Gene3D	Ribonuclease Inhibitor	153	269	IPR032675	-
	Pral1964g00010	643	SMART	serkin_6	289	585	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral1964g00010	643	FunFam	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase	365	591	-	-
	Pral1964g00010	643	Pfam	Leucine rich repeat N-terminal domain	35	73	IPR013210	-
	Pral1964g00010	643	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	410	422	IPR008271	GO:0004672\|GO:0006468
	Pral1964g00010	643	SUPERFAMILY	L domain-like	34	259	-	-
	Pral1964g00010	643	FunFam	Nuclear pore complex protein NUP107	34	170	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral1964g00010	Pral-Chr1964	80960	85170	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral1964g00010	84	582	Receptor kinase-like Gene Family	AT3G47570	33.860	1.00e-74	257

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XII-1	Pral1964g00010		Pkinase	1.5e-41	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral1964g00010	-		-	gmx:100815766	615.15