Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1957g00007 ATGCCTTCGAAGGGAAAAAAGCATGCCAAGGCACAGTCGAGGCTATCAGCCTCTGAAGTGGCCTCTCCTCGTACACCGTCATTGACTCCTAACAGAGATTCAGATCTGAGTGAAGAAGAACTTATCCTTTCTTGTGAAGAAGCATCAAAAATATTCCCGCCTTTCATTGGCAATTCTGCTTTTGTTGGCGATATCAGTGCTGTGGAGCTGAAATCCAAAGGCTGTAAAATCTGGCTTTCTGAGTCTTCCATGGTTTCTTCTTGCCTTGCGCCGGGTTCCATTGTGTCGGTTTCAATTGCATCTCCGAGAAAGAAAAATCTGGATTCAGATAGCTTTCCTCTTAAATCATTAACAAAAGAATGTGCCCGATGCTATGGACTGGATGCTGGGAACACTTCTGATAGTGTTGCGGGGAACTACTTTGCTCTTGCACTAGTTTTTCCTTCTAGCAAGGTTTTGAAGAATGGAGTACAAATTTCCTCAGAGCTTTCTCATACCATGGGATGCCCTACTTTTGGCACACATGTTTTCATTTATCCGGTGCAGAATCAGTGCCTATCTTCTCTTGTAAATGAGAAAAATCAACCACGTTCTACAGAAGATAATAGCCTGCTGGTGTATGATTGCAAGGACTTGTATCTTCAGCTGGCACCTTTGAAGAATGGATTACCCATGAAAATCGGTAACATATCACCAACGGACTTGTCTGCAGCAAAATTCAATCTTCAATTTGGGAATGAAAATGTTACTTCTAAAACACCTTCGAATGGATTGAAATTGTCTAGTTTTAGTGATTTATCTTCACCTATATTTGAAGATTCTTCTTCTAGCATACATAATCAAAAGAGCCAATCCCTAATTTCATTTGATCTAAGGGAGGCATGGGATGAAAGCTCCAAAAAACTACTGCAGACATGCGCAATGTCATGGTTGTATTCCCGTTGGTTACTACTAGGGAATATTGTGACCATACAAATATTTTCAGAGCTGTGCGTTTTCCAAGTAATAGGAGCTACAAGTGTGTCAGGAGACCAGTCTACTAATTCATCAAGTGAAATTAGTTCTTCATACCGAGAGGGTTCTGACATATCAGAGCATACAAATCATGCTATTATTGTCACCCGTGAAACAAAGGTATCTTTATCTTTGCCATCAAATGTGACTTCTGATGAGCTGATTCAAAGAGATTTATCTAAGGTGGAACTCAGGGAGAAGGGCACTAAGGCTAGTGTACCTCATAATATTTCAAAATTGGGTGGTCTTTCTAAAGAATATGCAGTTTTGAAGGATATAATTTTGTCTTCAGTAAAAAATGACCTATTAAGTAACTTCGGGTTACGAGCTACAAAAGGCGTTCTTCTTCATGGTCCACCTGGCACAGGAAAGACTTCACTAGCTCAATTGTGTGCTCATGATGTGGGGGTCAATCTTTTCTGGATAAATGGACCTGAAATTGTAGGCCAATATTATGGTGAAAGTGAGCAAGCATTGCGTGAAGTTTTTGATTCAGCCATTAAGGCTGCACCTGCTGTGGTGTTTATTGATGAGTTGGATGCTATTGCCCCTTCAAGGAAAGATGGTGGTGATGAGCTTTCTCAGAGAATGGTTGCCGCCTTATTGAATCTCATGGATGGAATTTGTAGAACTGAAGGATTACTTGTTATTGCTGCCACCAACAGGCCTGACAATATTGAGCCTGCTCTGAGGCGGCCTGGAAGATTTGACAAGGAAATTGAAATTGGTGTGCCATCTCCTCTCCAACGTTTGGATTTGTTGCTCACTCTTCTCAGTGAAGTGGATCACGCTCTTTCAGAGATACAAATTGAATATCTTGCCACAGTCACACATGGTTTCGTGGGTGCTGATCTAGTTGCCCTTTGCAAAGAGGCAGGCTTGGTTTGTCTTAGGCGTCATTTTAATTTTAAGAAGGATTGGGATAATTGCTGCTATGATGGAACATCCTCACAATATAAGGGTCAGCAACCTGCGTTGCTTAAAGATGAAGATGACTCAAGAGATCATTCTGGCCATTCACCTTCATCTGTTTCAGAGTTATCAGTGGCTTCGAACTATTTGCTACCTTCTTGCATGACAGGTTTAACTTCTGACAATATGGAAATAGTTCCTGACAGTGGTGAGGATCATAATTTGAAAGTAACTTACGAAGATTTTCAGAAGGCAAGAATGATAATAAGACCCAGTGCCATGAGAGAGGTAATCCTGGAGATTCCTAAGGTGAAGTGGGAAGATGTTGGTGGCCAAAAGGATGTCAAAGCCCAGCTGATGGAAGCAGTAGAATGGCCCCAGAAGCACCATGATGCATTGAAGCGTATTGGGACTCAGCCTCCAAAAGGTGTGTTGATGTTTGGACCTCCAGGTTGTAGCAAAACTCTCATGGCACGTGCAGTTGCTTCTGAAGCAGCAATGAATTTTCTGGCTGTTAAGGGTCCGGAACTCTTCAGCAAATGGGTAGGTGAATCTGAGAAGGCTGTCAAATCTTTGTTTGCAAAAGCAAGGGCCAATGCTCCATCTATTGTATTTTTTGATGAAATAGATGGCCTTGCCGTCACTCGGGGGAAGGAAAGTGATGGTGTTTCAGTATCAGATAGAGTCATGAGTCAACTTCTTGTTGAATTGGATGGTCTGCATGAAAGAGCTAATGTCACTGTCATTGCTGCTACAAATAGGCCAGACAAGATTGATCCTGCCCTTTTAAGACCAGGACGCTTTGACCGTCTGCTGTATGTGGGACCTCCAAATGAGATTGACAGAGAAGAGATATTCCGCATTCACTTGCAGAGAATCCCATGTTGTTCTGACGTAAGCCTAAGAGAACTGGCTTCTCTTACAGACGGTTGCACTGGTGCTGATATATCACTAATATGCCGGGAGGCAGCTGTTGCAGCTATTGAGGAGAGCCTTAATGCTTCGGCAATAACAATGAAGCATTTGAAGACGGCAATTAAACAGGTGCAGCCAACAGAGATTCAGTCTTACCAACAGCTGTCAGCTAAATTTCAAAGGGCTGTAGGCACCTGTGATGTAAAACATGAGGGCAGCAACATGCAGTGTTCAAACAGATCTACTTGGCTCCCCATTGGGAAATTCATAAGATCTGCCAAATTGCTTCTCTATCGGTTTTCAGTGGCTGTTTTCTATTCGACAACTGCTTCATGTGGGTAG 3183 0.4244 MPSKGKKHAKAQSRLSASEVASPRTPSLTPNRDSDLSEEELILSCEEASKIFPPFIGNSAFVGDISAVELKSKGCKIWLSESSMVSSCLAPGSIVSVSIASPRKKNLDSDSFPLKSLTKECARCYGLDAGNTSDSVAGNYFALALVFPSSKVLKNGVQISSELSHTMGCPTFGTHVFIYPVQNQCLSSLVNEKNQPRSTEDNSLLVYDCKDLYLQLAPLKNGLPMKIGNISPTDLSAAKFNLQFGNENVTSKTPSNGLKLSSFSDLSSPIFEDSSSSIHNQKSQSLISFDLREALXDESSKKLLQTCAMSWLYSRWLLLGNIVTIQIFSELCVFQVIGATSVSGDQSTNSSSEISSSYREGSDISEHTNHAIIVTRETKVSLSLPSNVTSDELIQRDLSKVELREKGTKASVPHNISKLGGLSKEYAVLKDIILSSVKNDLLSNFGLRATKGVLLHGPPGTGKTSLAQLCAHDVGVNLFWINGPEIVGQYYGESEQALREVFDSAIKAAPAVVFIDELDAIAPSRKDGGDELSQRMVAALLNLMDGICRTEGLLVIAATNRPDNIEPALRRPGRFDKEIEIGVPSPLQRLDLLLTLLSEVDHALSEIQIEYLATVTHGFVGADLVALCKEAGLVCLRRHFNFKKDWDNCCYDGTSSQYKGQQPALLKDEDDSRDHSGHSPSSVSELSVASNYLLPSCMTGLTSDNMEIVPDSGEDHNLKVTYEDFQKARMIIRPSAMREVILEIPKVKWEDVGGQKDVKAQLMEAVEWPQKHHDALKRIGTQPPKGVLMFGPPGCSKTLMARAVASEAAMNFLAVKGPELFSKWVGESEKAVKSLFAKARANAPSIVFFDEIDGLAVTRGKESDGVSVSDRVMSQLLVELDGLHERANVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNEIDREEIFRIHLQRIPCCSDVSLRELASLTDGCTGADISLICREAAVAAIEESLNASAITMKHLKTAIKQVQPTEIQSYQQLSAKFQRAVGTCDVKHEGSNMQCSNRSTWLPIGKFIRSAKLLLYRFSVAVFYSTTASCG 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1957g00007 1061 CDD RecA-like_CDC48_r2-like 758 917 - -
Pral1957g00007 1061 Gene3D - 920 1003 - -
Pral1957g00007 1061 MobiDBLite consensus disorder prediction 661 683 - -
Pral1957g00007 1061 FunFam Putative vesicular transport protein (CDC48) 403 582 - -
Pral1957g00007 1061 Gene3D - 584 739 - -
Pral1957g00007 1061 MobiDBLite consensus disorder prediction 15 32 - -
Pral1957g00007 1061 Gene3D - 396 582 IPR027417 -
Pral1957g00007 1061 PANTHER AAA-FAMILY ATPASE 73 1008 - -
Pral1957g00007 1061 ProSitePatterns AAA-protein family signature. 889 907 IPR003960 GO:0005524|GO:0016887
Pral1957g00007 1061 FunFam calmodulin-interacting protein 111 isoform X1 744 919 - -
Pral1957g00007 1061 Pfam AAA+ lid domain 607 640 IPR041569 -
Pral1957g00007 1061 Pfam AAA+ lid domain 941 986 IPR041569 -
Pral1957g00007 1061 MobiDBLite consensus disorder prediction 1 33 - -
Pral1957g00007 1061 Pfam ATPase family associated with various cellular activities (AAA) 787 918 IPR003959 GO:0005524|GO:0016887
Pral1957g00007 1061 Pfam ATPase family associated with various cellular activities (AAA) 453 582 IPR003959 GO:0005524|GO:0016887
Pral1957g00007 1061 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 412 638 IPR027417 -
Pral1957g00007 1061 SMART AAA_5 449 585 IPR003593 GO:0016887
Pral1957g00007 1061 SMART AAA_5 783 921 IPR003593 GO:0016887
Pral1957g00007 1061 FunFam Calmodulin-interacting protein 111 584 747 - -
Pral1957g00007 1061 MobiDBLite consensus disorder prediction 664 678 - -
Pral1957g00007 1061 Gene3D - 744 919 IPR027417 -
Pral1957g00007 1061 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 745 996 IPR027417 -
Pral1957g00007 1061 CDD RecA-like_CDC48_NLV2_r1-like 418 581 - -
Pral1957g00007 1061 FunFam spermatogenesis-associated protein 5-like protein 1 920 1002 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1957g00007 Pral-Chr1957 14788 23212 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1957g00007 715 1047 Calmodulin-binding Proteins AT3G56690 74.030 3.81e-165 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1957g00007 - - gmx:100788600 1282.7