Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1957g00004 ATGAGGGAAGAGGAGCCGAATTGGTTATCGCGATGGGAGGAACTCCCTGCTCCGAACGAACTCATGCCCCTCTCCCAAACCCTAATCACTCCTGATCTTGCTTTGGCTTTTGATATCCGAAATCCTCATGTCAATACCTCACAACAACTCCCTCAGGCCCCTCCTCCGTCAAATCCTCTGCCTTCTCCTGGAAATCCTACTCACCCAAACTCCACGGACTTTGCTGATTCCGCTGAATTGGGTTCTGGTATTGGAGGCGAGGAACCCGCTCGCACCCTTAAACGTCCTCGCCTCGTTTGGACTCCACAGCTTCACAAGAGGTTTGTTGATGCTGTGGCACACTTGGGAATAAAGAATGCTGTGCCCAAGACTATAATGCAGTTGATGAGTGTGGATGGATTAACCAGGGAAAACGTGGCTAGCCACTTGCAGAAATACCGGCTTTATCTTAAGCGCATGCAAGGATTATCCGGTGGCGGCAGCGGCGGAGGCAGCGGCGGCGGAGGAGGAGGCGGTCCATTGGCTGCTTCTGCAGATCCTGCCACTGACCATTTGTTTGCTAGTTCGCCTGTGCCACCCCATTTCTTGCACCCAACTAGGCCTAATTCGGATCATTTCTTGCCGTTTGTGCCGGTCCAGACTCTGCAGCACCACCATCACCAGCAGCACATGGTGGCAGCTGCGGCGGCGGCGGCCGCGCATCCACAGTTGCAGCCACAGTATCACAGACAGGTGGGACATTTTGGTTCACCGCCAAACGGGCACTTTGAGCATCCCTTTCTAACAAGGCAGTCTCAAGCTCAGCCACTTCACAGGATGGGAGCCCCAGTGCACAATCCAGTAACCGCTAATTATGTGGAGGACATGGAATCGGCCAACGCGGCAGGAGCGAGAAAGGTGTTATCTGCACTTCTGCAGATCTAA 924 0.54 MREEEPNWLSRWEELPAPNELMPLSQTLITPDLALAFDIRNPHVNTSQQLPQAPPPSNPLPSPGNPTHPNSTDFADSAELGSGIGGEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSGGGSGGGSGGGGGGGPLAASADPATDHLFASSPVPPHFLHPTRPNSDHFLPFVPVQTLQHHHHQQHMVAAAAAAAAHPQLQPQYHRQVGHFGSPPNGHFEHPFLTRQSQAQPLHRMGAPVHNPVTANYVEDMESANAAGARKVLSALLQI 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1957g00004 307 NCBIfam myb-like DNA-binding domain, SHAQKYF class 96 148 IPR006447 GO:0003677
Pral1957g00004 307 MobiDBLite consensus disorder prediction 159 199 - -
Pral1957g00004 307 FunFam Two-component response regulator 91 154 - -
Pral1957g00004 307 Pfam Myb-like DNA-binding domain 99 147 IPR001005 -
Pral1957g00004 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 100 151 IPR017930 -
Pral1957g00004 307 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 6 268 IPR044841 GO:0003700|GO:0006355
Pral1957g00004 307 Gene3D - 92 154 - -
Pral1957g00004 307 MobiDBLite consensus disorder prediction 45 90 - -
Pral1957g00004 307 MobiDBLite consensus disorder prediction 52 66 - -
Pral1957g00004 307 SUPERFAMILY Homeodomain-like 92 152 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1957g00004 Pral-Chr1957 11091 13637 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1957g00004 1 302 G2-like Transcription Factor Family AT3G10760 57.391 4.25e-94 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pral1957g00004 Myb_DNA-binding 2.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1957g00004 - - qsa:O6P43_006330 432.95