Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1953g00006 ATGGAGAAAACAGATGCAGATGCAGATGCAGATGCTGGAGTTCGAAGTGATGGAGAGTCCTTGTCGGATCCTGCTCATTATCATCGTCTACAGTCCAGACGACCAAGCCTCACCTCTTTGCATATACCAGTAAGGTCAATAGAAAGTGCGTTATCATCTTCTGCAAAGACGGAGGTTCTATCACTGTCAAGTCCAGGTTCCTTCCGAGGAGGACTGCCTCCAAGACCTAGTTCAACCAGAGTCAAGTCTTCCATGAGAAGTTTACTTCCTCAGAGGAGCTTAAAGGCAAAAAATTGTTCTCCAGATTGTGAAAGGGAAGTTCTCATTGTTTCTGATATTCCCTCATCAGATGGAACTTTGCATAAGCCTTCAGCTTCAAGGTCCCTTTCTTTTAATAAGGTTCTGTTCTCTTCATCAACAAAAACATCAAATTCATTACCGGTCACACCAATTGCAAATACAGTTGCAGAGACTGTGCAGGGAAGTCATCCAGGAAGCGGTCCTGACGTAAGTAAAGTGGAAGTCAAGCATCACATGACTCGATCATTTTCAGTTCCAGTTAATATCAAATCCTCTAGTTTAAAGCGAACAGGTTCTAGTGGTTTGATGCGAGTAATTTCAGCAAGACCACATCCTGCAGCTGTTAATGGCCATTCATTTGATAAAGCTTCAGTGCCAGAGATTGTTCCAGCAATTGAAGATGCTACTGAGGACATTCCTGAAGAAGAAGCAGTTTGTAGGATTTGTTTAATGGGGCTGGAAGAAGGGGGGGATACCCTTAAGATGGAGTGCAGTTGTAGAGGAGACCTTGCGCTTGCTCACCAAGAGTGTGCAGTGAAGTGGTTTAGTATAAAAGGAAACAAGACATGTGATGTTTGCAAGCAGGATGTCCAAAATCTTCCAGTGACTCTGTTGAAAATCCAAAGTCCTCATCCTACTGCTGGACGGTCATCAAATACCCCACAGGAGACAGAAGTTTCTTTTCACAGGATCTGGCAGGATGTACCGGTACTTGTCTTGGTCAGCATGCTAGCTTATTTTTGCTTTTTAGAGCAACTTCTGGTTTCAGATATGGGTCCTCGTGCTCTTGCCGTCTCACTTCCTTTTGCCTGCACATTTGGCCTCATCGCATCTTTGCTTGCTTCAACCTTGGTGAGCAGGGATTACATGTGGGCTTATGCTTGCTTCCAGTTTGCAATTGTCATCCTGCTGGCTCATGTATTTTACACTATACGTAAATTAAATGGGATTCTCTCGGTTATGCTTTCTTCACTTGCTGGATTTGGGATTGCAATGGTTGTAAACTATCTGCTCAAGGAATTTTTAAATTGGAGATTTAGAAGGCAGATACAATCTATTAACCATACCCTAACGGAGCAGGAACAAGGACAGCATAATAGGCGGCAAAGACAGCAGCAAGTGCAACATCAATAA 1434 0.4344 MEKTDADADADAGVRSDGESLSDPAHYHRLQSRRPSLTSLHIPVRSIESALSSSAKTEVLSLSSPGSFRGGLPPRPSSTRVKSSMRSLLPQRSLKAKNCSPDCEREVLIVSDIPSSDGTLHKPSASRSLSFNKVLFSSSTKTSNSLPVTPIANTVAETVQGSHPGSGPDVSKVEVKHHMTRSFSVPVNIKSSSLKRTGSSGLMRVISARPHPAAVNGHSFDKASVPEIVPAIEDATEDIPEEEAVCRICLMGLEEGGDTLKMECSCRGDLALAHQECAVKWFSIKGNKTCDVCKQDVQNLPVTLLKIQSPHPTAGRSSNTPQETEVSFHRIWQDVPVLVLVSMLAYFCFLEQLLVSDMGPRALAVSLPFACTFGLIASLLASTLVSRDYMWAYACFQFAIVILLAHVFYTIRKLNGILSVMLSSLAGFGIAMVVNYLLKEFLNWRFRRQIQSINHTLTEQEQGQHNRRQRQQQVQHQ 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1953g00006 477 SMART ringv_2 245 294 IPR011016 GO:0008270
Pral1953g00006 477 SUPERFAMILY RING/U-box 242 297 - -
Pral1953g00006 477 MobiDBLite consensus disorder prediction 61 86 - -
Pral1953g00006 477 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 231 301 IPR013083 -
Pral1953g00006 477 MobiDBLite consensus disorder prediction 1 34 - -
Pral1953g00006 477 Pfam RING-variant domain 246 293 IPR011016 GO:0008270
Pral1953g00006 477 CDD RING_CH-C4HC3_MARCH 246 294 - -
Pral1953g00006 477 ProSiteProfiles Zinc finger RING-CH-type profile. 238 300 IPR011016 GO:0008270
Pral1953g00006 477 MobiDBLite consensus disorder prediction 1 30 - -
Pral1953g00006 477 PANTHER OS02G0165000 PROTEIN 29 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1953g00006 Pral-Chr1953 18553 27321 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1953g00006 240 300 C3H Transcription Factor Family AT2G37950 48.387 7.05e-15 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1953g00006 - - qsa:O6P43_014398 550.436