Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1953g00004 ATGGAGAAAACAGATGCAGATGCAGATGCAGATGCTGGAGTTCGAAGTGATGGAGAGTCCTTGTCGGATCCTGCTCATTATCATCGTCTACAGACATGCACAGGAAATGAAAAAGCTGATAATTACTCCTTGCTTCTGCAGTCCAGACGACCAAGCCTCACCTCTTTGCATATACCAGTAAGGTCAATAGAAAGTGCGTTATCATCTTCTGCAAAGACGGAGGTTCTATCACTGTCAAGTCCAGGTTCCTTCCGAGGAGGACTGCCTCCAAGACCTAGTTCAACCAGAGTCAAGTCTTCCATGAGAAGTTTACTTCCTCAGAGGAGCTTAAAGGCAAAAAATTGTTCTCCAGATTGTGAAAGGGAAGTTCTCATTGTTTCTGATATTCCCTCATCAGATGGAACTTTGCATAAGCCTTCAGCTTCAAGGTCCCTTTCTTTTAATAAGGTTCTGTTCTCTTCATCAACAAAAACATCAAATTCATTACCGGTCACACCAATTGCAAATACAGTTGCAGAGACTGTGCAGGGAAGTCATCCAGGAAGCGGTCCTGACGTAAGTAAAGTGGAAGTCAAGCATCACATGACTCGATCATTTTCAGTTCCAGTTAATATCAAATCCTCTAGTTTAAAGCGAACAGGTTCTAGTGGTTTGATGCGAGTAATTTCAGCAAGACCACATCCTGCAGCTGTTAATGGCCATTCATTTGATAAAGCTTCAGTGCCAGAGATTGCAATTGAAGATGCTACTGAGGACATTCCTGAAGAAGAAGCAGTTTGTAGGATTTGTTTAATGGGGCTGGAAGAAGGGGGGGATACCCTTAAGATGGAGTGCAGTTGTAGAGGAGACCTTGCGCTTGCTCACCAAGAGTGTGCAGTGAAGTGGTTTAGTATAAAAGGAAACAAGACATGTGATGTTTGCAAGCAGGATGTCCAAAATCTTCCAGTGACTCTGTTGAAAATCCAAAGTCCTCATCCTACTGCTGGACGGTCATCAAATACCCCACAGGAGACAGAAGTTTCTTTTCACAGGATCTGGCAGGATGTACCGGTACTTGTCTTGGTCAGCATGCTAGCTTATTTTTGCTTTTTAGAGCAACTTCTGGTTTCAGATATGGGTCCTCGTGCTCTTGCCGTCTCACTTCCTTTTGCCTGCACATTTGGCCTCATCGCATCTTTGCTTGCTTCAACCTTGGTGAGCAGGGATTACATGTGGGCTTATGCTTGCTTCCAGTTTGCAATTGTCATCCTGCTGGCTCATGTATTTTACACTATACGTAAATTAAATGGGATTCTCTCGGTTATGCTTTCTTCACTTGCTGGATTTGGGATTGCAATGGTTGTAAACTATCTGCTCAAGGAATTTTTAAATTGGAGATTTAGAAGGCAGATACAATCTATTAACCATACCCTAACGGAGCAGGAACAAGGACAGCATAATAGGCGGCAAAGACAGCAGCAAGTGCAACATCAATAA 1476 0.4329 MEKTDADADADAGVRSDGESLSDPAHYHRLQTCTGNEKADNYSLLLQSRRPSLTSLHIPVRSIESALSSSAKTEVLSLSSPGSFRGGLPPRPSSTRVKSSMRSLLPQRSLKAKNCSPDCEREVLIVSDIPSSDGTLHKPSASRSLSFNKVLFSSSTKTSNSLPVTPIANTVAETVQGSHPGSGPDVSKVEVKHHMTRSFSVPVNIKSSSLKRTGSSGLMRVISARPHPAAVNGHSFDKASVPEIAIEDATEDIPEEEAVCRICLMGLEEGGDTLKMECSCRGDLALAHQECAVKWFSIKGNKTCDVCKQDVQNLPVTLLKIQSPHPTAGRSSNTPQETEVSFHRIWQDVPVLVLVSMLAYFCFLEQLLVSDMGPRALAVSLPFACTFGLIASLLASTLVSRDYMWAYACFQFAIVILLAHVFYTIRKLNGILSVMLSSLAGFGIAMVVNYLLKEFLNWRFRRQIQSINHTLTEQEQGQHNRRQRQQQVQHQ 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1953g00004 491 MobiDBLite consensus disorder prediction 77 103 - -
Pral1953g00004 491 SUPERFAMILY RING/U-box 256 311 - -
Pral1953g00004 491 PANTHER OS02G0165000 PROTEIN 38 476 - -
Pral1953g00004 491 CDD RING_CH-C4HC3_MARCH 260 308 - -
Pral1953g00004 491 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 315 IPR013083 -
Pral1953g00004 491 ProSiteProfiles Zinc finger RING-CH-type profile. 252 314 IPR011016 GO:0008270
Pral1953g00004 491 SMART ringv_2 259 308 IPR011016 GO:0008270
Pral1953g00004 491 MobiDBLite consensus disorder prediction 1 24 - -
Pral1953g00004 491 Pfam RING-variant domain 260 307 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1953g00004 Pral-Chr1953 18553 27324 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1953g00004 243 314 C3H Transcription Factor Family AT2G37950 47.945 1.83e-15 73.6