Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1953g00003 ATGGAGAAAACAGATGCAGATGCAGATGCAGATGCTGGAGTTCGAAGTGATGGAGAGTCCTTGTCGGATCCTGCTCATTATCATCGTCTACAGACATGCACAGGAAATGAAAAAGCTGATAATTACTCCTTGCTTCTGCAGTCCAGACGACCAAGCCTCACCTCTTTGCATATACCAGTAAGGTCAATAGAAAGTGCGTTATCATCTTCTGCAAAGACGGAGGTTCTATCACTGTCAAGTCCAGGTTCCTTCCGAGGAGGACTGCCTCCAAGACCTAGTTCAACCAGAGTCAAGTCTTCCATGAGAAGTTTACTTCCTCAGAGGAGCTTAAAGGCAAAAAATTGTTCTCCAGATTGTGAAAGGGAAGTTCTCATTGTTTCTGATATTCCCTCATCAGATGGAACTTTGCATAAGCCTTCAGCTTCAAGGTCCCTTTCTTTTAATAAGGTTCTGTTCTCTTCATCAACAAAAACATCAAATTCATTACCGGTCACACCAATTGCAAATACAGTTGCAGAGACTGTGCAGGGAAGTCATCCAGGAAGCGGTCCTGACGTAAGTAAAGTGGAAGTCAAGCATCACATGACTCGATCATTTTCAGTTCCAGTTAATATCAAATCCTCTAGTTTAAAGCGAACAGGTTCTAGTGGTTTGATGCGAGTAATTTCAGCAAGACCACATCCTGCAGCTGTTAATGGCCATTCATTTGATAAAGCTTCAGTGCCAGAGATTGTTCCAGCAATTGAAGATGCTACTGAGGACATTCCTGAAGAAGAAGCAGTTTGTAGGATTTGTTTAATGGGGCTGGAAGAAGGGGGGGATACCCTTAAGATGGAGTGCAGTTGTAGAGGAGACCTTGCGCTTGCTCACCAAGAGTGTGCAGTGAAGTGGTTTAGTATAAAAGGAAACAAGACATGTGATGTTTGCAAGCAGGATGTCCAAAATCTTCCAGTGACTCTGTTGAAAATCCAAAGTCCTCATCCTACTGCTGGACGGTCATCAAATACCCCACAGGAGACAGAAGTTTCTTTTCACAGGATCTGGCAGGATGTACCGGTACTTGTCTTGGTCAGCATGCTAGCTTATTTTTGCTTTTTAGAGCAACTTCTGGTTTCAGATATGGGTCCTCGTGCTCTTGCCGTCTCACTTCCTTTTGCCTGCACATTTGGCCTCATCGCATCTTTGCTTGCTTCAACCTTGGTGAGCAGGGATTACATGTGGGCTTATGCTTGCTTCCAGTTTGCAATTGTCATCCTGCTGGCTCATGTATTTTACACTATACGTAAATTAAATGGGATTCTCTCGGTTATGCTTTCTTCACTTGCTGGATTTGGGATTGCAATGGTTGTAAACTATCTGCTCAAGGAATTTTTAAATTGGAGATTTAGAAGGCAGATACAATCTATTAACCATACCCTAACGGAGCAGGAACAAGGACAGCATAATAGGCGGCAAAGACAGCAGCAAGTGCAACATCAATAA 1482 0.4332 MEKTDADADADAGVRSDGESLSDPAHYHRLQTCTGNEKADNYSLLLQSRRPSLTSLHIPVRSIESALSSSAKTEVLSLSSPGSFRGGLPPRPSSTRVKSSMRSLLPQRSLKAKNCSPDCEREVLIVSDIPSSDGTLHKPSASRSLSFNKVLFSSSTKTSNSLPVTPIANTVAETVQGSHPGSGPDVSKVEVKHHMTRSFSVPVNIKSSSLKRTGSSGLMRVISARPHPAAVNGHSFDKASVPEIVPAIEDATEDIPEEEAVCRICLMGLEEGGDTLKMECSCRGDLALAHQECAVKWFSIKGNKTCDVCKQDVQNLPVTLLKIQSPHPTAGRSSNTPQETEVSFHRIWQDVPVLVLVSMLAYFCFLEQLLVSDMGPRALAVSLPFACTFGLIASLLASTLVSRDYMWAYACFQFAIVILLAHVFYTIRKLNGILSVMLSSLAGFGIAMVVNYLLKEFLNWRFRRQIQSINHTLTEQEQGQHNRRQRQQQVQHQ 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1953g00003 493 MobiDBLite consensus disorder prediction 77 103 - -
Pral1953g00003 493 PANTHER OS02G0165000 PROTEIN 38 478 - -
Pral1953g00003 493 SUPERFAMILY RING/U-box 258 313 - -
Pral1953g00003 493 CDD RING_CH-C4HC3_MARCH 262 310 - -
Pral1953g00003 493 ProSiteProfiles Zinc finger RING-CH-type profile. 254 316 IPR011016 GO:0008270
Pral1953g00003 493 SMART ringv_2 261 310 IPR011016 GO:0008270
Pral1953g00003 493 Pfam RING-variant domain 262 309 IPR011016 GO:0008270
Pral1953g00003 493 MobiDBLite consensus disorder prediction 1 25 - -
Pral1953g00003 493 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 317 IPR013083 -
Pral1953g00003 493 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1953g00003 Pral-Chr1953 18545 27322 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1953g00003 256 316 C3H Transcription Factor Family AT2G37950 48.387 7.26e-15 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1953g00003 - - qsa:O6P43_014398 568.54