Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1951g00016 ATGACAGATCCTCAGTCTTGGTTCAACTTCATCCCTCTTCTTCATCCTCCTCATCACTGTTCTTCCTTTACTACTTCTCATCAATTCAACGCCTGTAATTCCTTATACCCTCCTCATGCTCAGTACTCTAATAATCACTGCACATCATCTTCCATTCAATACCAAAGCTCTTCTAGTTTCTCCACTTTAGGCCATCCTCCAAGTTCCCCTCCTCTCAAAGAAGCCCTGCCTCTCATAAACAATTTAAGCCTCACAACAAGCGAACCCTCAAAAAGAGCCCTAGAAGAGGAAGAGGGGGAAAAGAATGAGAGAATGGAGAAAGAATATGAAGAAGATGACGACGAAGATGATGATGATAGAGGAACCGTGACGGTAGCCCTAGGAATAGGGCTTCCTACTAGCATGAGCACTTCTTCTTCTTCTCCACCTCCTTCTCATATGGGTTCAAGAAGCCAGATTTCAAAGGCTGTTGAAATGGCTGAAAAAGAGGAACTTGGTTTGGTTTCTGGATACCCTTTGGAGAGATTAAACAAGGGTCAGTATTGGATTCCAACCCCTTCTCAGATTCTCATTGGCCCTACTCAGTTCTCCTGCCCTCTCTGCTTAAAGACTTTCAATAGATACAATAATCTTCAGATGCATATGTGGGGACATGGATCACAATACAGAAGAGGAGCAGATTCTCTAAAAGGGACACAACCAACGGGAATGCTAAGACTCCCATGTTACTGTTGTGCACCAGATTGTAAGCACAACATTGAACATCCACGAGCAAGGCCTTTGAAGGACTTCAGAACTCTGCAGACTCACTACAAGAGAAAGCATGGCATCAAACCCTACATGTGCCGGAAGTGCGGGAAGCCGTTCGCCGTCAAAGGCGACTGGAGGACTCACGAGAAGAACTGCGGCAAGCTCTGGTACTGTCGTTGTGGTTCTGACTTTAAACACAAAAGGTCTCTTAAAGATCACATCAAGGCCTTTGGCCATGGCCATGCAGCTTGCTGCTTGCATGAAGAAGACGAGCCAGCTTCTGACATTGAACAAGATGGTGAAAACCCCTAG 1062 0.4548 MTDPQSWFNFIPLLHPPHHCSSFTTSHQFNACNSLYPPHAQYSNNHCTSSSIQYQSSSSFSTLGHPPSSPPLKEALPLINNLSLTTSEPSKRALEEEEGEKNERMEKEYEEDDDEDDDDRGTVTVALGIGLPTSMSTSSSSPPPSHMGSRSQISKAVEMAEKEELGLVSGYPLERLNKGQYWIPTPSQILIGPTQFSCPLCLKTFNRYNNLQMHMWGHGSQYRRGADSLKGTQPTGMLRLPCYCCAPDCKHNIEHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCGKPFAVKGDWRTHEKNCGKLWYCRCGSDFKHKRSLKDHIKAFGHGHAACCLHEEDEPASDIEQDGENP 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1951g00016 353 MobiDBLite consensus disorder prediction 82 153 - -
Pral1951g00016 353 ProSiteProfiles Zinc finger C2H2 type domain profile. 196 223 IPR013087 -
Pral1951g00016 353 MobiDBLite consensus disorder prediction 129 152 - -
Pral1951g00016 353 Coils Coil 91 115 - -
Pral1951g00016 353 Gene3D Classic Zinc Finger 195 218 - -
Pral1951g00016 353 Gene3D Classic Zinc Finger 238 329 - -
Pral1951g00016 353 MobiDBLite consensus disorder prediction 90 106 - -
Pral1951g00016 353 SUPERFAMILY beta-beta-alpha zinc fingers 190 218 IPR036236 -
Pral1951g00016 353 ProSitePatterns Zinc finger C2H2 type domain signature. 198 218 IPR013087 -
Pral1951g00016 353 SUPERFAMILY beta-beta-alpha zinc fingers 264 300 IPR036236 -
Pral1951g00016 353 FunFam Zinc finger protein WIP2 249 331 - -
Pral1951g00016 353 SMART c2h2final6 306 329 IPR013087 -
Pral1951g00016 353 SMART c2h2final6 280 300 IPR013087 -
Pral1951g00016 353 SMART c2h2final6 196 218 IPR013087 -
Pral1951g00016 353 PANTHER ZINC FINGER PROTEIN WIP2 40 348 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1951g00016 Pral-Chr1951 208546 212623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1951g00016 158 348 C2H2 Transcription Factor Family AT3G57670 78.866 3.36e-115 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral1951g00016 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1951g00016 - - gmx:100794446 437.573