Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1949g00004 ATGTGTTTTATTCCAGGATGGTCCATACTTGCTGCTGTAATTGATCTACTAAACATGGGAAAACTTGCTTCCTTTGTTTTCATTTTCTTCCTTCACTACTTTATGGCCTTCTTGGCATGGAGCGAGGGGAATTCCACTGTCGACAAATATGCACTGCTTGCTTTTAAAGCATCTATTGTGGATCCATACAATCTCTTGGCCAACTGGTCTGACTCTTCTTCTTCTCCATGTGATTGGGTTGGTGTTGGATGCAATACACGCCACAGAAGGGTTCATTCCTTAAAACTTAGTGATGCGGGTCTTAAAGGCATCATATCTCCATGGCTAGGAAATCTGTCATTCCTTGTTGAACTTGATCTAAGTATCAATGATTTTTACGGTGAGATACCAAAAGAGTGGGTACAATTGCGTAGGTTGAAACTGCTCAACATGAGCTACAATAACTTTCACGGGCAAGTTCCAATGTGGATAGGAGATTTATCTATGCTTGAGTACCTGAGTTTTCGAAATAATAGTCTCATTGGATTTATTCCATTATCTCTATTCAATTTATCAAGGTTGGAGATCTTGGATTGGAATTCTAACTTCATTCAGGGAAGCATTCCACTTGAGATAGGAAATTTGAAGCACTTGAAGATGTTACAAATTGCAGGGAACAAACTTTCTGAAACTATTCCACCAACAATTTTCAACTTATCTTCACTTCAAAAATTGAATTTGTCCCATAACACTTTGTCAGATCTGCAAGAATTGTCACTCTCCCAAAATCAATTATATGGCAGTCTCCCAACCAACGTGTGTTTTGGGCTCCCGAGACTTGAATTTTTCTCTGTGGCTGAAAACGATCTCTCCGGTGAACTGCCATCTAGTTGGCATCAATGCAAAGAACTGAAGGTTTTGGAATTAGGTTTTAACAGGTTCAACAGAGGATACATACCAAGCGACATTGGAAGTTTACCCAATCTTCAAGTTTTGCATCTCATGAACAACAACTTGGAAGGAGAAATTCCATCATCTCTCTTCAGCAATTCTTCTTTAAGAATATTACGTTTAGGACAAAACGGTTTAAATGGGAGTATACCAACTATTGGGAATCAGACAATGCTGGAAACTTTAGTTCTAAATAACAACTCCTTTTCAGGTGAAATTCCTCAATCTATCTACAACATACCTTCTTTGAGAATAGTTGACTTTACCTATAACTATTTAAAGGGTAATTTGCCAGAAGATATGTGCTATAGACTCCCTTTACTTGAAGTTTTTGGAGTTGGTCTTAATCAATTCGAGGGACGTATTCCAAAGTCAATAAGTAACTGCACAAATTTGCGAGCCTTATTTTTGTGTCAGAACTCATTTTCAGGTCTTATACCCAAGGAGATGGGCAATCTTCATAAGCTTGAAGATTTGAGTTTAGTATATAATAATTTCAGTGGACCCATTCCTTCTCACATATTCAACATTACGGCATTGGCAAATGTCTACGTTCAAGATAATTTCCTTTCTAGCTTTCTCCCATCAAATTTAGGAATTGGCATTCCCAATCTGCAGAAACTAGGGTTGGGACAAAATCACTTTATTGGACAAATTCCAATCAGCATCTCAAATGCTTCTAAGCTCACTATTGTAGATCTGTCATGGAATAAGTTTTGTGGAGATATACCAACTGCGCTTGGGAATCTAACAAACATGATCGCATTATATTCTGATGAGAATGATTTGAGTGGGATGATTCCAAGTACAATTAACAGACTGCAAAGCCTTCAACATTTAAGTCTTAGCAACAACAAATTGCAAGGGTCCATCATAAATGAACTGTGCCAAATCAGAAGTTTGAGTGAATTGTATCTAGCCAACAACATGTTTTCGGGAATGATTCCAAAGTGCTTCACAAATACTTCTCTGCGGAGGTTGGATTTAAGCTCTAACAAATTGATTTCTCATATACCCTCTTCTATTTGGAGCCTTGAAGATATATTAGTCTTAGACTTATCCTCCAATGCATTGAGTGGAAGAATTTCTCCTGCAGTATCAAACTTGAAAGCAATTATACTCTTGAATTTGTCAAGAAATCAAATTTCTGGAAACATCCCAACAACTATGGGCTATTTGAGAACATTGCAAAATCTATCTTTGGCACATAACAAACTCCAAGGGTCTATTCCTGAATCATTTAGTGGCATGATAAGTATGGAATCCTTGGATCTCTCCCAAAATTATTTGTCTAGGGTGATTCCAAAGTCCTTAGAGTTACTTGTCCATATGGAGTACATTAATCTTTCATACAATTTATTATATGGAGAAATTCCAAATGGTGGGCCTTTTGCTAATTTTACATATGAATCTTTTATGATGAATGAAAATCTTTGTGGGAAGCCCCAGCTAAAAGTCCATCCATGCAAAAATGGAAACAAGCACATCTCAACTAAAATGATGCTTGTGATCAAATGCTCACCGCCTGTAGTTTTTGCAATCGTTTTGGTTGCCTCATGCCTAATGTTTCTTAAGTTTAAGAAGGTTCATGTTAGTCATGAGATGAACAATAGAGACTCCTTAAATTTGGACACACTAATTAAGATATCCTATTATGATCTTTTGCAAGCAACGAATAGGTTTGATGAGGGTAATTTTCTTGGCAAGGGAAGTTTTGGATCAGTCTACAAAGGAATTCTTTCAAATGGAAAGATAGTTGCTGCAAAAGTATTTAACTCAAACTTGCAAGAAGCATTGAGGAGTTTTGATATTGAATGTGCTGCTATATGCAATTTACGTCATCGAAACCTCATTAAGATCATCAGCAGTTGCTCCAATGGTGATTTTAAATCTCTCATAATGGAATTCATGCCAAATGGAAGTCTTGATAGATGGTTGTACTCCCATAATTATTGTTTAGATATAGAGCAAAGATTGGACATAATGATTGATGTGGCATTAGCCTTGGAGTATCTTCATCATGGTTCTCCTACACCAGTAGTCCATTGTGATATAAAGCCAAGCAATGTTTTATTGGATGAAAATATGGTGGCCCATTTGAGTGATTTTGGAATTGCCAAATTATTAATTGACAGTCACTCAGAAATTTATACGGAAACCTTGGCCACAATTGGTTATATGGCACCAGAGTATGGATCAAAAGGAGCAATTTCAATCAAAGGAGATGTCTACAGCTTTGGTATTTTGCTCATAGAAATGCTTACAAGGAAGAAGCCAACAGATGAGATGTTTGCTCAAGATCTGAATCTGAAAGAATTTGTTAGCAAATCAACACCACATTCAATCATCAATATTGTGGATGTCAATTTGCTGCGCACAGGCAACCAAAAAATTGGTAATATATTGCTGCATATATCATCAGTTTTTGAATTAGCCTTAAATTGTTGCGCTGATGCACCTGAGGCAAGACCCAATATGTCAGAGGTTGTGGAGTCGCTGAGAAAAAGGAAGGCCATGTTAGTGTAA 3456 0.3704 MCFIPGWSILAAVIDLLNMGKLASFVFIFFLHYFMAFLAWSEGNSTVDKYALLAFKASIVDPYNLLANWSDSSSSPCDWVGVGCNTRHRRVHSLKLSDAGLKGIISPWLGNLSFLVELDLSINDFYGEIPKEWVQLRRLKLLNMSYNNFHGQVPMWIGDLSMLEYLSFRNNSLIGFIPLSLFNLSRLEILDWNSNFIQGSIPLEIGNLKHLKMLQIAGNKLSETIPPTIFNLSSLQKLNLSHNTLSDLQELSLSQNQLYGSLPTNVCFGLPRLEFFSVAENDLSGELPSSWHQCKELKVLELGFNRFNRGYIPSDIGSLPNLQVLHLMNNNLEGEIPSSLFSNSSLRILRLGQNGLNGSIPTIGNQTMLETLVLNNNSFSGEIPQSIYNIPSLRIVDFTYNYLKGNLPEDMCYRLPLLEVFGVGLNQFEGRIPKSISNCTNLRALFLCQNSFSGLIPKEMGNLHKLEDLSLVYNNFSGPIPSHIFNITALANVYVQDNFLSSFLPSNLGIGIPNLQKLGLGQNHFIGQIPISISNASKLTIVDLSWNKFCGDIPTALGNLTNMIALYSDENDLSGMIPSTINRLQSLQHLSLSNNKLQGSIINELCQIRSLSELYLANNMFSGMIPKCFTNTSLRRLDLSSNKLISHIPSSIWSLEDILVLDLSSNALSGRISPAVSNLKAIILLNLSRNQISGNIPTTMGYLRTLQNLSLAHNKLQGSIPESFSGMISMESLDLSQNYLSRVIPKSLELLVHMEYINLSYNLLYGEIPNGGPFANFTYESFMMNENLCGKPQLKVHPCKNGNKHISTKMMLVIKCSPPVVFAIVLVASCLMFLKFKKVHVSHEMNNRDSLNLDTLIKISYYDLLQATNRFDEGNFLGKGSFGSVYKGILSNGKIVAAKVFNSNLQEALRSFDIECAAICNLRHRNLIKIISSCSNGDFKSLIMEFMPNGSLDRWLYSHNYCLDIEQRLDIMIDVALALEYLHHGSPTPVVHCDIKPSNVLLDENMVAHLSDFGIAKLLIDSHSEIYTETLATIGYMAPEYGSKGAISIKGDVYSFGILLIEMLTRKKPTDEMFAQDLNLKEFVSKSTPHSIINIVDVNLLRTGNQKIGNILLHISSVFELALNCCADAPEARPNMSEVVESLRKRKAMLV 1151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1949g00004 1151 SMART serkin_6 871 1150 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1949g00004 1151 Gene3D Ribonuclease Inhibitor 195 246 IPR032675 -
Pral1949g00004 1151 SMART LRR_typ_2 208 232 IPR003591 -
Pral1949g00004 1151 SMART LRR_typ_2 463 487 IPR003591 -
Pral1949g00004 1151 SMART LRR_typ_2 632 655 IPR003591 -
Pral1949g00004 1151 SMART LRR_typ_2 160 184 IPR003591 -
Pral1949g00004 1151 SMART LRR_typ_2 584 607 IPR003591 -
Pral1949g00004 1151 SMART LRR_typ_2 245 269 IPR003591 -
Pral1949g00004 1151 SMART LRR_typ_2 319 343 IPR003591 -
Pral1949g00004 1151 SMART LRR_typ_2 727 750 IPR003591 -
Pral1949g00004 1151 SMART LRR_typ_2 703 726 IPR003591 -
Pral1949g00004 1151 SMART LRR_typ_2 608 631 IPR003591 -
Pral1949g00004 1151 ProSitePatterns Protein kinases ATP-binding region signature. 877 899 IPR017441 GO:0005524
Pral1949g00004 1151 Gene3D Ribonuclease Inhibitor 46 194 IPR032675 -
Pral1949g00004 1151 Gene3D Ribonuclease Inhibitor 247 363 IPR032675 -
Pral1949g00004 1151 PANTHER OS04G0122200 PROTEIN 461 557 - -
Pral1949g00004 1151 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 511 803 - -
Pral1949g00004 1151 SUPERFAMILY Protein kinase-like (PK-like) 854 1143 IPR011009 -
Pral1949g00004 1151 ProSiteProfiles Leucine-rich repeat profile. 633 655 IPR001611 GO:0005515
Pral1949g00004 1151 ProSiteProfiles Protein kinase domain profile. 871 1150 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1949g00004 1151 ProSiteProfiles Leucine-rich repeat profile. 234 255 IPR001611 GO:0005515
Pral1949g00004 1151 Gene3D Ribonuclease Inhibitor 511 800 IPR032675 -
Pral1949g00004 1151 Gene3D Ribonuclease Inhibitor 364 510 IPR032675 -
Pral1949g00004 1151 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 947 1151 - -
Pral1949g00004 1151 Pfam Protein kinase domain 873 1141 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1949g00004 1151 SMART LRR_sd22_2 245 264 - -
Pral1949g00004 1151 SMART LRR_sd22_2 584 607 - -
Pral1949g00004 1151 SMART LRR_sd22_2 463 489 - -
Pral1949g00004 1151 SMART LRR_sd22_2 184 205 - -
Pral1949g00004 1151 SMART LRR_sd22_2 208 234 - -
Pral1949g00004 1151 SMART LRR_sd22_2 703 726 - -
Pral1949g00004 1151 SMART LRR_sd22_2 631 657 - -
Pral1949g00004 1151 SMART LRR_sd22_2 160 181 - -
Pral1949g00004 1151 Gene3D Phosphorylase Kinase; domain 1 834 946 - -
Pral1949g00004 1151 FunFam Leucine-rich repeat receptor-like protein kinase TDR 244 510 - -
Pral1949g00004 1151 Pfam Leucine rich repeat N-terminal domain 48 85 IPR013210 -
Pral1949g00004 1151 SUPERFAMILY RNI-like 93 418 - -
Pral1949g00004 1151 Gene3D Transferase(Phosphotransferase) domain 1 947 1149 - -
Pral1949g00004 1151 Pfam Leucine rich repeat 609 668 IPR001611 GO:0005515
Pral1949g00004 1151 Pfam Leucine rich repeat 704 764 IPR001611 GO:0005515
Pral1949g00004 1151 ProSitePatterns Serine/Threonine protein kinases active-site signature. 990 1002 IPR008271 GO:0004672|GO:0006468
Pral1949g00004 1151 SUPERFAMILY RNI-like 417 769 - -
Pral1949g00004 1151 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 45 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1949g00004 Pral-Chr1949 54174 62469 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1949g00004 19 1148 Receptor kinase-like Gene Family AT5G46330 34.658 0.0 564
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Pral1949g00004 Pkinase 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1949g00004 - K13420 pcin:129285519 1108.59