Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1943g00001 ATGACAGAAGTAGCGAGCTCAGTGGTGCACGAGGTGCTGGGACGACGGGTTCAGGATGTGGATCAGCCGATTGTTGATTACATTATCAACGTCCTCGCAGATGATGACTTTGATTTTGGAGATGATGGAGAAGGCGTCTTCGATTTTCTTGGGGAGCTACTTGTGGGTGCCGGCTGTGTCGACGACTTCTCTGAGTGTCGCACTGTATGTAGCAAAATGTCTGAAAAATTTGGAAAGCATGGGTTGGTCAAAGCCAAACCAACCGTGCGAAGCCTTGCAGCACCCTTCAGAATGAATGACGGAATGGATGATGGGGTAGCTCCTAAGAAGAAGCGTGAGCCTACTGATGGTCCTTTGCTAACTGAACGTGACCGTGTGAAGCTAGAAAGAAGAAAGAGGAAGGAGGAACGCCAAAGGGAGGCACAGTACCAAATGCATCTAGCAGAAATGGAAGCAGCACGAGAAGGGATGCCCGTTGTATGTGTTAGGCATGATAACAGTGGTGGACCCGCTGTCAAGGACATTCACATGGAGAACTTCAATATTTCTGTTGGTGGCCGTGATCTCATTGAGGAGGGTTCAATCACACTCTCATTCGGAAGACATTATGGTCTTATTGGAAGAAACGGTACTGGGAAAACAACATTCCTCAGGCATATGGCTATGCATGCCATTGATGGCATACCTTATAATTGTCAGATATTGCATGTGGAACAAGAGGTAGTTGGTGATGATACAACAGCGTTGCAGTGTGTTCTCAATTCTGATATTGAGAGAACTCAACTTCTGGAAGAAGAAGCTCGATTACTTGCCCAACAGAGAGAGTTGGAATCCGGGGATGTGGCTGTCAAGAGCAATGATGCCATTTCACAGAGACTTGAGGAAATCTACAAGAGGCTTGAGTTAATTGATGCTTACTCTGCAGAGTCACGTGCAGCTTCAATACTTGCAGGCCTAAGCTTCTCTCCTGAGATGCAAAAGAGGGCGACAAAAACTTTCTCTGGAGGATGGCGGATGCGAATAGCTCTTGCTCGTGCACTATTTATAGAACCTGACTTGTTGCTTCTTGATGAACCTACGAACCATCTTGATCTTCATGCTGTCTTATGGCTGGAGTCTTACTTGGTTAAGTGGCCAAAAACGTTCATAGTTGTTTCTCATGCTAGAGAATTTTTGAACACGGTGGTGACTGACATAATTCACCTACAAGCTAAGAAGTTGACTACTTATAAAGGGGATTATGATAACTTTGAGAAGACTCGAGAAGAACAGCTTAAAAACCAGCAAAAAGCAGTGGAGGCAAATGAACGTGCAAGATCTCATATGCAGTCTTTCATTGACAAGTTCCGTTATAATGCCAAGAGAGCATCGCTTGTTCAATCAAGAATCAAGGCTTTAGACCGGATGGGTCGTGTGGATGAAATTATCAATGATCCTGACTACAAGTTTGAGTTCCCAACGCCAGATGATAGACCTGGTGCACCAATAATAAGTTTTAGTGATGCATCATTTGGTTACCCTGGGGGCCCAATTCTATTTAAGAATTTGAATTTTGGGATTGATCTTGACAGCCGTATTGCAATGGTTGGGCCCAATGGTATTGGAAAATCTACCATACTCAAGTTAATTGCAGGGGAACTACAACCCATTTCTGGGACAGTTTTTCGCTCTGCCAAGGTTCGCATAGCAGTCTTCAGTCAGCATCACGTTGATGGACTAGACTTGTCTTCAAATCCCCTTCTGTATATGATGCGCTGCTATCCTGGTGTTCCTGAACAGAAGCTTCGAGCTCACTTGGGCTCTTTTGGTGTAACTGGAAATCTTGCGCTTCAGCCAATGTATACACTGTCAGGGGGACAAAAAAGCAGGGTTGCATTTGCAAAGATAACTTTCAAGAAACCACACATAATATTGCTTGATGAACCTTCCAATCACCTGGACTTGGATGCTGTTGAGGCGCTAATTCAAGGTCTTGTGATGTTCCAAGGAGGCATTCTAATGGTGAGTCACGATGAGCACCTAATATCGGGAAGTGTGGAGGAGCTATGGGCTGTCTCCCAAGGAAGAGTTAGCCCATTCCAAGGCACTTTCCAAGATTATAAGAGGATACTCCAGTCATCATAG 2124 0.4487 MTEVASSVVHEVLGRRVQDVDQPIVDYIINVLADDDFDFGDDGEGVFDFLGELLVGAGCVDDFSECRTVCSKMSEKFGKHGLVKAKPTVRSLAAPFRMNDGMDDGVAPKKKREPTDGPLLTERDRVKLERRKRKEERQREAQYQMHLAEMEAAREGMPVVCVRHDNSGGPAVKDIHMENFNISVGGRDLIEEGSITLSFGRHYGLIGRNGTGKTTFLRHMAMHAIDGIPYNCQILHVEQEVVGDDTTALQCVLNSDIERTQLLEEEARLLAQQRELESGDVAVKSNDAISQRLEEIYKRLELIDAYSAESRAASILAGLSFSPEMQKRATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLESYLVKWPKTFIVVSHAREFLNTVVTDIIHLQAKKLTTYKGDYDNFEKTREEQLKNQQKAVEANERARSHMQSFIDKFRYNAKRASLVQSRIKALDRMGRVDEIINDPDYKFEFPTPDDRPGAPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPISGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCYPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVMFQGGILMVSHDEHLISGSVEELWAVSQGRVSPFQGTFQDYKRILQSS 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1943g00001 707 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 175 429 IPR003439 GO:0005524
Pral1943g00001 707 Coils Coil 125 145 - -
Pral1943g00001 707 Pfam ABC transporter 194 361 IPR003439 GO:0005524
Pral1943g00001 707 CDD ABCF_EF-3 175 406 - -
Pral1943g00001 707 FunFam ATP-binding cassette sub-family F member 3 459 707 - -
Pral1943g00001 707 Pfam ABC transporter 400 480 IPR032781 -
Pral1943g00001 707 MobiDBLite consensus disorder prediction 100 120 - -
Pral1943g00001 707 CDD ABCF_EF-3 497 689 - -
Pral1943g00001 707 MobiDBLite consensus disorder prediction 103 120 - -
Pral1943g00001 707 Gene3D - 461 707 IPR027417 -
Pral1943g00001 707 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 414 IPR027417 -
Pral1943g00001 707 ProSitePatterns ABC transporters family signature. 616 630 IPR017871 GO:0005524|GO:0016887
Pral1943g00001 707 SMART AAA_5 522 689 IPR003593 GO:0016887
Pral1943g00001 707 SMART AAA_5 199 406 IPR003593 GO:0016887
Pral1943g00001 707 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 479 698 IPR027417 -
Pral1943g00001 707 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 155 706 - -
Pral1943g00001 707 ProSitePatterns ABC transporters family signature. 333 347 IPR017871 GO:0005524|GO:0016887
Pral1943g00001 707 Gene3D - 170 460 IPR027417 -
Pral1943g00001 707 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 497 706 IPR003439 GO:0005524
Pral1943g00001 707 Pfam ABC transporter 514 644 IPR003439 GO:0005524
Pral1943g00001 707 FunFam ABC transporter F family member 3 127 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1943g00001 Pral-Chr1943 9030 17368 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1943g00001 459 658 Calmodulin-binding Proteins AT2G36910 26.293 7.57e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1943g00001 K06158 - zju:107429832 1220.3