Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1939g00001 ATGGAGGGTGTTGGAATGATGGCATTCACAGAAGAGAGGTGCGATGAGTTAGAGAAGATGGCGGCGGCGATGATGTTCACAACAATGGCGGATGACAAGTCGTCGTCGGAGGCGGCGGCGGCGTCGACTGTGCCGGCACCGTTCCTGACAAAGACGTATCAGCTGGTGGACGACCCTCTCACCGACCACATTGTCTCCTGGGGCTCCGATGAGTCCACTTTCGTTGTTTGGAGGCCTCCTGAGTTTGCCAGAGATCTCCTTCCCAACTATTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAGCTCAATACATATGGTTTCAAGAAAGTAGTAGCAGATAGGTGGGAATTTGCAAATGAGTATTTCAGAAAAGGAGCTAAGCATCTTCTTTGTGAAATCCACAGAAGAAAAAGCCCTCACCATCATCACCACCACCTTCATGATCAGCCACCTCTACAGAACCATCATCAAACTCTCTTTTGGAACACAGAGACCTCTCCATTACTAATCCCACCTTATTCTCCCACTAAACCAGCAGCTGCAATAAGAAGGGGAGGAGGAGGATCATCAGGAACCAGTAGTACTCATGAAGTTCTAAGAGCACTTTCGGAAGACAATCAGAGACTCAGGAGGAAGAACTTGATGCTGTTATCAGAACTCACTCACATGAAGAGTCTCTACAATGACATTATATACTTCATCCAGAACCATGTCAAACCAGTGGACATTAGCAAAGATTATTATGATCATCCCTTGCAGAAAATAAGAGGCAGATCAATGTGCAGAAGTAGTGAAAATAATAATAATAATGATAGTGTTCATATTCCCAAGCTGGTTGAGTTGGATTCATCAGTGTCACTTGATCAGACTCAAACTGATGCTGATAAGTTGGATGATTCATCAGCTGGTTCTGTGAAGCTATTTGGGGTCCCACTCAGTAGCAGAAAGAGGTTGCATTCAGAAAATATGGAGGAAGAGGAATTTGCTGAGTGTGTTAACTAA 1005 0.4507 MEGVGMMAFTEERCDELEKMAAAMMFTTMADDKSSSEAAAASTVPAPFLTKTYQLVDDPLTDHIVSWGSDESTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVVADRWEFANEYFRKGAKHLLCEIHRRKSPHHHHHHLHDQPPLQNHHQTLFWNTETSPLLIPPYSPTKPAAAIRRGGGGSSGTSSTHEVLRALSEDNQRLRRKNLMLLSELTHMKSLYNDIIYFIQNHVKPVDISKDYYDHPLQKIRGRSMCRSSENNNNNDSVHIPKLVELDSSVSLDQTQTDADKLDDSSAGSVKLFGVPLSSRKRLHSENMEEEEFAECVN 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1939g00001 334 Gene3D - 41 138 IPR036388 -
Pral1939g00001 334 Pfam HSF-type DNA-binding 48 137 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral1939g00001 334 ProSitePatterns HSF-type DNA-binding domain signature. 87 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral1939g00001 334 Coils Coil 200 220 - -
Pral1939g00001 334 SMART hsfneu3 44 137 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral1939g00001 334 FunFam Heat stress transcription factor B-4 40 138 - -
Pral1939g00001 334 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 37 282 IPR027725 -
Pral1939g00001 334 SUPERFAMILY "Winged helix" DNA-binding domain 45 137 IPR036390 -
Pral1939g00001 334 PRINTS Heat shock factor (HSF) domain signature 48 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral1939g00001 334 PRINTS Heat shock factor (HSF) domain signature 86 98 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral1939g00001 334 PRINTS Heat shock factor (HSF) domain signature 99 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1939g00001 Pral-Chr1939 16641 18271 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1939g00001 44 320 HSF AT1G46264 49.673 1.62e-84 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pral1939g00001 HSF_DNA-bind 7.7e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1939g00001 K09419 - gmx:100776060 305.449