Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1937g00006 ATGGCTGTTTCTTCCATATCTTCTTCGACATTAGTCCCTTCTCTTTCACTCCTCTCATCGTCTTCGTTGAATTCGAAGGCAAACTTCTCCTTTTCCTTCTTCCACGCTGGTACTAACACCTTTAAGCTTCAAAGCTCAAAGCCTCTGCTATCTTCAACTAGGGTTTATGCTGCTCCCGAAGTATTGGATTCCCCAGATTCCGCTGAAGTTTCTCAACAAACCCCAGATGACTCCGACTCCTCCACCCTTGAGGTTGGAGACTTGGGGAGTCCAAGCACCTCGTCTCTTAGCATTGGTGCAGATGCAGATGCGATGGCACCAAAGCAGAAGATTAGAATCAAACTTAGATCTTATTGGGTTCCCCTGATAGAGGATTCATGCAAGCAGATAATGGATGCAGCAAAAAGTACCAATGCAAAAACCATGGGTCCTGTACCATTGCCAACTAAGAAACGAATCTACTGTGTTCTTAAATCTCCGCATGTGAACAAGGATGCCCGGTTCCATTTTGAGATAAGAACCCATCAGCGTCTCATTGATATTCTATATCCTACTGCCCAAACAATAGATTCTTTGATGCAACTTGATCTTCCTGCTGGTGTTGATGTGGAGGTCAAACTTTAA 624 0.4423 MAVSSISSSTLVPSLSLLSSSSLNSKANFSFSFFHAGTNTFKLQSSKPLLSSTRVYAAPEVLDSPDSAEVSQQTPDDSDSSTLEVGDLGSPSTSSLSIGADADAMAPKQKIRIKLRSYWVPLIEDSCKQIMDAAKSTNAKTMGPVPLPTKKRIYCVLKSPHVNKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1937g00006 207 MobiDBLite consensus disorder prediction 62 96 - -
Pral1937g00006 207 SUPERFAMILY Ribosomal protein S10 110 207 IPR036838 -
Pral1937g00006 207 Pfam Ribosomal protein S10p/S20e 112 206 IPR027486 -
Pral1937g00006 207 ProSitePatterns Ribosomal protein S10 signature. 134 149 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pral1937g00006 207 Hamap 30S ribosomal protein S10 [rpsJ]. 108 207 IPR001848 GO:0003735|GO:0005840|GO:0006412
Pral1937g00006 207 Gene3D Ribosomal protein S10 domain 99 207 IPR036838 -
Pral1937g00006 207 FunFam 30S ribosomal protein S10 105 207 - -
Pral1937g00006 207 PRINTS Ribosomal protein S10 family signature 145 160 IPR001848 GO:0003735|GO:0005840|GO:0006412
Pral1937g00006 207 PRINTS Ribosomal protein S10 family signature 110 123 IPR001848 GO:0003735|GO:0005840|GO:0006412
Pral1937g00006 207 PRINTS Ribosomal protein S10 family signature 166 180 IPR001848 GO:0003735|GO:0005840|GO:0006412
Pral1937g00006 207 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 63 207 IPR001848 GO:0003735|GO:0005840|GO:0006412
Pral1937g00006 207 NCBIfam 30S ribosomal protein S10 109 206 IPR001848 GO:0003735|GO:0005840|GO:0006412
Pral1937g00006 207 SMART Ribosomal_S10_2 112 206 IPR027486 -
Pral1937g00006 207 MobiDBLite consensus disorder prediction 66 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1937g00006 Pral-Chr1937 106083 109452 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1937g00006 109 207 Cytoplasmic Ribosomal Protein Gene Family AT5G62300 32.000 7.76e-09 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1937g00006 K02946 - qsu:111986192 286.574