Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1936g00003 ATGGATCACAGAAGGTTAACCAAGGACTCGCTCTCGTACTCTACTCTTTTCAATCTCGAGTCTTTGATGAATTTTCAACTTCCACAACAAGATGATGATTTTGATTATTATGGGAATAGTAGTCAGGATGAGAGCAGAGATAGCCAAGGTGGGGCAATCGCAAATCACAGCAACGGGAGTATGCGTGGAAGAGAGGTAAATTTGCTGAAGAAGAGGAAGTGGTCTCAAAACAGTGACGACGAAGACAAGGGTAATTTTTGTGGAAAACACATGACTGAGGAGCGATATCGATCAATGCTTGGGGAACACATTCAAAAATACAGGAGGAGGTATAAAGATACCTCGTCTAGTCCTGCCCAAAATCGTGCTGGTGCTCAACTTCTTAAAAGTAACATAGGTTTGAAAGCGCGGAAGTTAGTGAATGAGCATCGAGGTGGAATACATGCTCTGGATGCTACATCTGAGTGGCCTAATGATATTAATGCTCAGAAACCTGTAAACTACCGTGATGCAGAATTCAGACAGCAATATGGACCTGACAGAACCATCTATGAACCAGCTTCTTTAGATATTGGAGATGGCGTTACCTACAAGATCCCTCCTACTTATGATAAGTTATCAGCGATGCTGAACCTTCCAAGTTTCTCTGATATCCTAGTTGAGGAATTTTACTTGAAAGGTACCTTGGATTTGGGATCCTTGGCTGCAATGATGGCTTCTGATAAGAGGGGTGGGACTAGAAACCGAGCAGGCATGGGGGAAACCTTACCTCAATACGATTCACTTCAGGCACGATTGAAGGCCCTGTCAGCATCTAATTCACCTCATCAATTTAGTCTGAAAGTATCCGACATTGGTTTGAATTCTTCCATCCCAGAGGGAGCTGCTGGAAATATTAAACGATCTATTTTGTCTGAGGGAGGTGTATTGCAGGTTTATTATGTGAAGGTTTTAGAGAAAGGTGACACGTATGAGATCATTGAAAGAAGCCTACCTAAGAAGCAAAAGGTAAAGAAAGACCCTTTGATGATTGAGAAGGAGGAAATGGAGAGAATTGGAAAAGTCTGGGTAAATATTGTGAGAAGAGACATACCTAAGCATCATAGGTTTTTTACTGGCTTCCATCGAAAGCAAATTGTTGATGCCAAGAGGTTCTCAGAGAACTGTCAAAGAGAGGTCAGAATGAAAGTGAGTAGATCACTTAAATTCATGAAGAGTGCATCCATTCGCACCCGGAAACTAGCTAGAGATGTCTTGCTGTTTTGGAAACGAGCAGATAAGGAGATGGCAGAATTGAGGAAAAAGGAGGAGAAAGAAGCTGCAGAAGCTTTGAGGCGGGAACAGGAGCTTCGAGAAACAAAGAGGCAGCAGCAAAGGCTGAATTTCCTTATACAGCAAACTGAGTTATACAGTCACTTTATGCAGAACAAGTCAAACTTGCTGTCCTCTGATGCTTTACCTATGGTAGATGAAAAAGCAGATGATCAAGCTGCAGAACCTGGCTCTTCAGATGTTAGGCCTTGTGAGGAGGAAGATCCTGAAGAGGCTGAACTGAAGAAGGAAGCTCTGAAAGCTGCTCAAGAAGCTGTCTCTAAGCAGAGAAAGTTGACAAGTGCTTTTGATGATGAATGCTTGAGGCTGCGTCAGGCTGGTGAAACTGATGCACTTTCACAGGAAGTTGCAGGAGCAAGTAACATTGATTTGCAAACCCCCTCAACCATGCCTGTGGCATCAACAGTTCGCACACCAGAAATGTTTAGAGGCTGTCTTAAAGAATATCAACTAAAAGGTCTTCAGTGGTTAGTTAATTGTTATGAGCAGGGTCTGAATGGTATACTTGCTGATGAAATGGGACTTGGAAAGACCATTCAAGCCATGGCTTTTTTAGCCCATTTAGCTGAGGAGAAAAATATATGGGGACCATTTTTGGTTGTTGCACCTGCATCAGTATTGAACAACTGGAATGAAGAACTTGAGCGCTTCTGCCCTGAAATGAAAGCTCTTCCTTATTGGGGTGGGCTTCATGAGCGGACGGTACTTAGGAAAAGTATTAACCCAAAGGATCTTTATCGTAGGGAAGCGAAATTCCACATTCTCATTACAAGCTACCAGCTACTAGTATCTGATGAGAAGCATTTTCGGCGTGTGAAATGGCAGTACATGGTATTAGATGAAGCCCAGGCAATCAAAAGTGCAAACAGTATAAGATGGAAGACACTCCTCAGTTTTAATTGTCGGAATCGCTTGCTGCTGACTGGTACACCAATTCAAAATAATATGGCAGAACTGTGGGCTCTTCTGCACTTCATTATGCCAACTTTATTCGATAGCCATGAACAGTTTAATGAATGGTTTTCAAAAGGAATTGAGAATCATGCAGAACATGGAGGTACTTTGAATGAACATCAACTTAACAGATTGCACTCTATTCTAAAGCCCTTCATGCTGCGACGAGTTAAAAAAGATGTAATATCCGAACTGACTAAGAAAATAGAGGTTACAGTGCACTGCAAGTTGAGTTCTCGCCAGCAAGCTTTCTATCAAGCAATCAAGAATAAAATATCTCTTGCTGAGTTGTTTGATAGTAATCGTGGGCAGCTCAATGATAAGAGAATTCTGAATTTAATGAATATTGTTATTCAACTAAGAAAGGTTTGCAACCATCCAGAGTTGTTTGAGAGGAGCGAGGGAACCACATTCTATAATTTTGCAGAGATTCCAAATTCCCTCCTCCCTCCTCCATTTGGGGAGTTGGAGGATGTATACTTTTCTGGGGCTCACAATCCAATATCATACAAGGTGCCAAAACTTGTCCATCAAGAAATCATGCCAGGTTCTAAATTGCTCAATTCAACAATTGCTCGTGGTGTTGGCAGAGAACTTTTTCAAAGACATTTTAATATTTATAGCCCGGAGAATGTTTTTCAATCTATCTTCTCTGAAGGGAATAAATCAAATGCGTCGTTTATTAAAAGTGGAACTTTTGGTTTTACCCATTTGATGGATTTGTCCCCGCAAGAAGTGATGTTTTCAGCTACTGGTTCTTTTATGGAGCAAGTACTGTTTTCTATGGTGAGATGGGAGCAGAAATTTATCAATGAAGTTGTGGACTTTGTAACGGAGACTTTAGATAATGATCCTGAATACAGTTCCCTTGAAAGGGGAAAAGTGAGGGCTGTTACACGAATGTTATTGGTGCCAACAAAATCTGAGACAAAAATTTTTCAAAGAACATTTGCTACTGGACCCAGCCATGCCCCTTTTGAGGCATTGGTTGTCCCATATCAAGATAGGATTATATCGAATGCAAGACTTATTCACTCAGCATACACATTTATCCCTCGGACTAGAGCTCCCCCAATTGTTGCCCACTGCTCAGACCGAAGCTTCTCTTATAAAACACTTGAAGAGTTGCATGACCCATGGGTTAAGAGATTGCTTGTGGGATTTGCACGTACATCTGAGTTTAATGGACCTAGAAAGCCAGATGGTCCTCCCCATCATTTAATTCAAGAGATTGATTCTGAACTACCAGTTGCACAGCCTGCTCTTCAGTTAACCTACAAAATTTTAGGTTCGTCTCCCCCCATGCAAAATTTTGACCCAGCAAAGTTGCTCACTGACTCTGGGAAGCTTCAAACGCTTGACATATTATTAAAACGCTTGCGGGCTGAAAATCACCGTGTTCTCTTGTTTGCTCAGATGACTAAGATGCTGAATATTCTTGAGGGGGAATGA 3738 0.4163 MDHRRLTKDSLSYSTLFNLESLMNFQLPQQDDDFDYYGNSSQDESRDSQGGAIANHSNGSMRGREVNLLKKRKWSQNSDDEDKGNFCGKHMTEERYRSMLGEHIQKYRRRYKDTSSSPAQNRAGAQLLKSNIGLKARKLVNEHRGGIHALDATSEWPNDINAQKPVNYRDAEFRQQYGPDRTIYEPASLDIGDGVTYKIPPTYDKLSAMLNLPSFSDILVEEFYLKGTLDLGSLAAMMASDKRGGTRNRAGMGETLPQYDSLQARLKALSASNSPHQFSLKVSDIGLNSSIPEGAAGNIKRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKVKKDPLMIEKEEMERIGKVWVNIVRRDIPKHHRFFTGFHRKQIVDAKRFSENCQREVRMKVSRSLKFMKSASIRTRKLARDVLLFWKRADKEMAELRKKEEKEAAEALRREQELRETKRQQQRLNFLIQQTELYSHFMQNKSNLLSSDALPMVDEKADDQAAEPGSSDVRPCEEEDPEEAELKKEALKAAQEAVSKQRKLTSAFDDECLRLRQAGETDALSQEVAGASNIDLQTPSTMPVASTVRTPEMFRGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPEMKALPYWGGLHERTVLRKSINPKDLYRREAKFHILITSYQLLVSDEKHFRRVKWQYMVLDEAQAIKSANSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVISELTKKIEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNDKRILNLMNIVIQLRKVCNHPELFERSEGTTFYNFAEIPNSLLPPPFGELEDVYFSGAHNPISYKVPKLVHQEIMPGSKLLNSTIARGVGRELFQRHFNIYSPENVFQSIFSEGNKSNASFIKSGTFGFTHLMDLSPQEVMFSATGSFMEQVLFSMVRWEQKFINEVVDFVTETLDNDPEYSSLERGKVRAVTRMLLVPTKSETKIFQRTFATGPSHAPFEALVVPYQDRIISNARLIHSAYTFIPRTRAPPIVAHCSDRSFSYKTLEELHDPWVKRLLVGFARTSEFNGPRKPDGPPHHLIQEIDSELPVAQPALQLTYKILGSSPPMQNFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEGE 1245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1936g00003 1245 MobiDBLite consensus disorder prediction 33 64 - -
Pral1936g00003 1245 Pfam SNF2-related domain 605 892 IPR000330 GO:0005524|GO:0140658
Pral1936g00003 1245 Gene3D - 828 899 IPR027417 -
Pral1936g00003 1245 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 602 773 IPR014001 -
Pral1936g00003 1245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 820 1243 IPR027417 -
Pral1936g00003 1245 Gene3D - 586 827 IPR038718 -
Pral1936g00003 1245 Gene3D - 1181 1245 IPR027417 -
Pral1936g00003 1245 Coils Coil 427 460 - -
Pral1936g00003 1245 FunFam Putative DNA helicase INO80 562 840 - -
Pral1936g00003 1245 Pfam DNA-binding domain 350 479 IPR020838 GO:0003677
Pral1936g00003 1245 PANTHER HELICASE SRCAP-RELATED 495 1243 - -
Pral1936g00003 1245 MobiDBLite consensus disorder prediction 492 507 - -
Pral1936g00003 1245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 574 818 IPR027417 -
Pral1936g00003 1245 SMART ultradead3 586 781 IPR014001 -
Pral1936g00003 1245 ProSiteProfiles DBINO domain profile. 355 480 IPR020838 GO:0003677
Pral1936g00003 1245 MobiDBLite consensus disorder prediction 33 62 - -
Pral1936g00003 1245 MobiDBLite consensus disorder prediction 492 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1936g00003 Pral-Chr1936 14805 23582 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1936g00003 611 892 RAD5 or RAD16-like Gene Family AT5G43530 29.358 3.98e-26 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral1936g00003 SNF2_N 3.5e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1936g00003 K11665 - gmx:100780615 2014.58