Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1936g00002 ATGGATCACAGAAGGTTAACCAAGGACTCGCTCTCGTACTCTACTCTTTTCAATCTCGAGTCTTTGATGAATTTTCAACTTCCACAACAAGATGATGATTTTGATTATTATGGGAATAGTAGTCAGGATGAGAGCAGAGATAGCCAAGGTGGGGCAATCGCAAATCACAGCAACGGGAGTATGCGTGGAAGAGAGGTAAATTTGCTGAAGAAGAGGAAGTGGTCTCAAAACAGTGACGACGAAGACAAGGGTAATTTTTGTGGAAAACACATGACTGAGGAGCGATATCGATCAATGCTTGGGGAACACATTCAAAAATACAGGAGGAGGTATAAAGATACCTCGTCTAGTCCTGCCCAAAATCGTGCTGGTGCTCAACTTCTTAAAAGTAACATAGGTTTGAAAGCGCGGAAGTTAGTGAATGAGCATCGAGGTGGAATACATGCTCTGGATGCTACATCTGAGTGGCCTAATGATATTAATGCTCAGAAACCTGTAAACTACCGTGATGCAGAATTCAGACAGCAATATGGACCTGACAGAACCATCTATGAACCAGCTTCTTTAGATATTGGAGATGGCGTTACCTACAAGATCCCTCCTACTTATGATAAGTTATCAGCGATGCTGAACCTTCCAAGTTTCTCTGATATCCTAGTTGAGGAATTTTACTTGAAAGGTACCTTGGATTTGGGATCCTTGGCTGCAATGATGGCTTCTGATAAGAGGGGTGGGACTAGAAACCGAGCAGGCATGGGGGAAACCTTACCTCAATACGATTCACTTCAGGCACGATTGAAGGCCCTGTCAGCATCTAATTCACCTCATCAATTTAGTCTGAAAGTATCCGACATTGGTTTGAATTCTTCCATCCCAGAGGGAGCTGCTGGAAATATTAAACGATCTATTTTGTCTGAGGGAGGTGTATTGCAGGTTTATTATGTGAAGGTTTTAGAGAAAGGTGACACGTATGAGATCATTGAAAGAAGCCTACCTAAGAAGCAAAAGGTAAAGAAAGACCCTTTGATGATTGAGAAGGAGGAAATGGAGAGAATTGGAAAAGTCTGGGTAAATATTGTGAGAAGAGACATACCTAAGCATCATAGGTTTTTTACTGGCTTCCATCGAAAGCAAATTGTTGATGCCAAGAGGTTCTCAGAGAACTGTCAAAGAGAGGTCAGAATGAAAGTGAGTAGATCACTTAAATTCATGAAGAGTGCATCCATTCGCACCCGGAAACTAGCTAGAGATGTCTTGCTGTTTTGGAAACGAGCAGATAAGGAGATGGCAGAATTGAGGAAAAAGGAGGAGAAAGAAGCTGCAGAAGCTTTGAGGCGGGAACAGGAGCTTCGAGAAACAAAGAGGCAGCAGCAAAGGCTGAATTTCCTTATACAGCAAACTGAGTTATACAGTCACTTTATGCAGAACAAGTCAAACTTGCTGTCCTCTGATGCTTTACCTATGGTAGATGAAAAAGCAGATGATCAAGCTGCAGAACCTGGCTCTTCAGATGTTAGGCCTTGTGAGGAGGAAGATCCTGAAGAGGCTGAACTGAAGAAGGAAGCTCTGAAAGCTGCTCAAGAAGCTGTCTCTAAGCAGAGAAAGTTGACAAGTGCTTTTGATGATGAATGCTTGAGGCTGCGTCAGGCTGGTGAAACTGATGCACTTTCACAGGAAGTTGCAGGAGCAAGTAACATTGATTTGCAAACCCCCTCAACCATGCCTGTGGCATCAACAGTTCGCACACCAGAAATGTTTAGAGGCTGTCTTAAAGAATATCAACTAAAAGGTCTTCAGTGGTTAGTTAATTGTTATGAGCAGGGTCTGAATGGTATACTTGCTGATGAAATGGGACTTGGAAAGACCATTCAAGCCATGGCTTTTTTAGCCCATTTAGCTGAGGAGAAAAATATATGGGGACCATTTTTGGTTGTTGCACCTGCATCAGTATTGAACAACTGGAATGAAGAACTTGAGCGCTTCTGCCCTGAAATGAAAGCTCTTCCTTATTGGGGTGGGCTTCATGAGCGGACGGTACTTAGGAAAAGTATTAACCCAAAGGATCTTTATCGTAGGGAAGCGAAATTCCACATTCTCATTACAAGCTACCAGCTACTAGTATCTGATGAGAAGCATTTTCGGCGTGTGAAATGGCAGTACATGGTATTAGATGAAGCCCAGGCAATCAAAAGTGCAAACAGTATAAGATGGAAGACACTCCTCAGTTTTAATTGTCGGAATCGCTTGCTGCTGACTGGTACACCAATTCAAAATAATATGGCAGAACTGTGGGCTCTTCTGCACTTCATTATGCCAACTTTATTCGATAGCCATGAACAGTTTAATGAATGGTTTTCAAAAGGAATTGAGAATCATGCAGAACATGGAGGTACTTTGAATGAACATCAACTTAACAGATTGCACTCTATTCTAAAGCCCTTCATGCTGCGACGAGTTAAAAAAGATGTAATATCCGAACTGACTAAGAAAATAGAGGTTACAGTGCACTGCAAGTTGAGTTCTCGCCAGCAAGCTTTCTATCAAGCAATCAAGAATAAAATATCTCTTGCTGAGTTGTTTGATAGTAATCGTGGGCAGCTCAATGATAAGAGAATTCTGAATTTAATGAATATTGTTATTCAACTAAGAAAGGTTTGCAACCATCCAGAGTTGTTTGAGAGGAGCGAGGGAACCACATTCTATAATTTTGCAGAGATTCCAAATTCCCTCCTCCCTCCTCCATTTGGGGAGTTGGAGGATGTATACTTTTCTGGGGCTCACAATCCAATATCATACAAGGTGCCAAAACTTGTCCATCAAGAAATCATGCCAGGTTCTAAATTGCTCAATTCAACAATTGCTCGTGGTGTTGGCAGAGAACTTTTTCAAAGACATTTTAATATTTATAGCCCGGAGAATGTTTTTCAATCTATCTTCTCTGAAGGGAATAAATCAAATGCGTCGTTTATTAAAAGTGGAACTTTTGGTTTTACCCATTTGATGGATTTGTCCCCGCAAGAAGTGATGTTTTCAGCTACTGGTTCTTTTATGGAGCAAGTACTGTTTTCTATGGTGAGATGGGAGCAGAAATTTATCAATGAAGTTGTGGACTTTGTAACGGAGACTTTAGATAATGATCCTGAATACAGTTCCCTTGAAAGGGGAAAAGTGAGGGCTGTTACACGAATGTTATTGGTGCCAACAAAATCTGAGACAAAAATTTTTCAAAGAACATTTGCTACTGGACCCAGCCATGCCCCTTTTGAGGCATTGGTTGTCCCATATCAAGATAGGATTATATCGAATGCAAGACTTATTCACTCAGCATACACATTTATCCCTCGGACTAGAGCTCCCCCAATTGTTGCCCACTGCTCAGACCGAAGCTTCTCTTATAAAACACTTGAAGAGTTGCATGACCCATGGGTTAAGAGATTGCTTGTGGGATTTGCACGTACATCTGAGTTTAATGGACCTAGAAAGCCAGATGGTCCTCCCCATCATTTAATTCAAGAGATTGATTCTGAACTACCAGTTGCACAGCCTGCTCTTCAGTTAACCTACAAAATTTTAGGTTCGTCTCCCCCCATGCAAAATTTTGACCCAGCAAAGTTGCTCACTGACTCTGGGAAGCTTCAAACGCTTGACATATTATTAAAACGCTTGCGGGCTGAAAATCACCGTGTTCTCTTGTTTGCTCAGATGACTAAGATGCTGAATATTCTTGAGGACTACATGAACTATAGAAAATATAGATATTTTAGACTCGATGGATCGTCATCCATTCAGGACCGCAGAGACATGGTTAGAGACTTCCAGCAGAGGAATGATGTTTTTGTGTTCTTACTTAGTACAAGAGCTGGTGGATTGGGTATCAACTTGACGGCTGCTGACACAGTAATCTTTTATGAGAATGATTGGAATCCCACATTGGATCAGCAGGCAATGGATAGAGCTCATCGATTGGGTCAAACAAAAGATGTCACTGTTTACAGACTTATATGTAAAGAGACAGTTGAAGAAAAGATTCTTCTTAGAGCAAGTCAGAAAAGCACTGTACAGAACCTCGTCATGACTGGTGGTTCTACTGATGATATTTTAGCTCCTGAGGATGTTGTATCTTTGCTTCTGGATGATGTGCAGTTAGAGCAGAAATTCAAAGAAATTCCTCTTCAGGTGAAGGATAAACAAAAGAGGAAACAAACTGTGAAGGGTATACGGGTAAATGAAGATGGTGATGCGTCTCTGGAAGATATAACAGACTCTGGAGCACAGGGCCCAGATAATGATATTCCTCTTGACCCAGAGGGATCAAAGCCCAGTAATAAAAAGAGGAAGGCTGCCTCTGACAAGCAAACCGCATCAAGGGCAAAGAATTTTCAAAAGATGAATGAGTTTAGTAATACAATGCCGATGGACTATGAGGTGTATGATGCTACTCAAGGTACAGATCCAGTGGTCCAGAAACCCAAGAGACCAAAGAAGGCAAAGAAAGTTGGGAACGACAAGTTTGACGACTCTTTTGCTGGTACAGTCGATATATTCTCAGAGCAGACCCAATAG 4563 0.4157 MDHRRLTKDSLSYSTLFNLESLMNFQLPQQDDDFDYYGNSSQDESRDSQGGAIANHSNGSMRGREVNLLKKRKWSQNSDDEDKGNFCGKHMTEERYRSMLGEHIQKYRRRYKDTSSSPAQNRAGAQLLKSNIGLKARKLVNEHRGGIHALDATSEWPNDINAQKPVNYRDAEFRQQYGPDRTIYEPASLDIGDGVTYKIPPTYDKLSAMLNLPSFSDILVEEFYLKGTLDLGSLAAMMASDKRGGTRNRAGMGETLPQYDSLQARLKALSASNSPHQFSLKVSDIGLNSSIPEGAAGNIKRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKVKKDPLMIEKEEMERIGKVWVNIVRRDIPKHHRFFTGFHRKQIVDAKRFSENCQREVRMKVSRSLKFMKSASIRTRKLARDVLLFWKRADKEMAELRKKEEKEAAEALRREQELRETKRQQQRLNFLIQQTELYSHFMQNKSNLLSSDALPMVDEKADDQAAEPGSSDVRPCEEEDPEEAELKKEALKAAQEAVSKQRKLTSAFDDECLRLRQAGETDALSQEVAGASNIDLQTPSTMPVASTVRTPEMFRGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPEMKALPYWGGLHERTVLRKSINPKDLYRREAKFHILITSYQLLVSDEKHFRRVKWQYMVLDEAQAIKSANSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVISELTKKIEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNDKRILNLMNIVIQLRKVCNHPELFERSEGTTFYNFAEIPNSLLPPPFGELEDVYFSGAHNPISYKVPKLVHQEIMPGSKLLNSTIARGVGRELFQRHFNIYSPENVFQSIFSEGNKSNASFIKSGTFGFTHLMDLSPQEVMFSATGSFMEQVLFSMVRWEQKFINEVVDFVTETLDNDPEYSSLERGKVRAVTRMLLVPTKSETKIFQRTFATGPSHAPFEALVVPYQDRIISNARLIHSAYTFIPRTRAPPIVAHCSDRSFSYKTLEELHDPWVKRLLVGFARTSEFNGPRKPDGPPHHLIQEIDSELPVAQPALQLTYKILGSSPPMQNFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYFRLDGSSSIQDRRDMVRDFQQRNDVFVFLLSTRAGGLGINLTAADTVIFYENDWNPTLDQQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSTDDILAPEDVVSLLLDDVQLEQKFKEIPLQVKDKQKRKQTVKGIRVNEDGDASLEDITDSGAQGPDNDIPLDPEGSKPSNKKRKAASDKQTASRAKNFQKMNEFSNTMPMDYEVYDATQGTDPVVQKPKRPKKAKKVGNDKFDDSFAGTVDIFSEQTQ 1520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1936g00002 1520 SMART helicmild6 1240 1323 IPR001650 -
Pral1936g00002 1520 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 602 773 IPR014001 -
Pral1936g00002 1520 CDD SF2_C_SNF 1202 1334 - -
Pral1936g00002 1520 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1214 1397 IPR001650 -
Pral1936g00002 1520 MobiDBLite consensus disorder prediction 1397 1414 - -
Pral1936g00002 1520 Coils Coil 427 460 - -
Pral1936g00002 1520 PANTHER HELICASE SRCAP-RELATED 89 533 - -
Pral1936g00002 1520 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 574 818 IPR027417 -
Pral1936g00002 1520 MobiDBLite consensus disorder prediction 1437 1452 - -
Pral1936g00002 1520 SMART ultradead3 586 781 IPR014001 -
Pral1936g00002 1520 MobiDBLite consensus disorder prediction 1397 1466 - -
Pral1936g00002 1520 ProSiteProfiles DBINO domain profile. 355 480 IPR020838 GO:0003677
Pral1936g00002 1520 FunFam Putative DNA helicase INO80 562 840 - -
Pral1936g00002 1520 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 820 1362 IPR027417 -
Pral1936g00002 1520 Pfam Helicase conserved C-terminal domain 1214 1323 IPR001650 -
Pral1936g00002 1520 MobiDBLite consensus disorder prediction 492 515 - -
Pral1936g00002 1520 Gene3D - 1181 1422 IPR027417 -
Pral1936g00002 1520 MobiDBLite consensus disorder prediction 33 64 - -
Pral1936g00002 1520 Gene3D - 828 899 IPR027417 -
Pral1936g00002 1520 Gene3D - 586 827 IPR038718 -
Pral1936g00002 1520 Pfam SNF2-related domain 605 892 IPR000330 GO:0005524|GO:0140658
Pral1936g00002 1520 Pfam DNA-binding domain 350 479 IPR020838 GO:0003677
Pral1936g00002 1520 MobiDBLite consensus disorder prediction 492 507 - -
Pral1936g00002 1520 FunFam DNA helicase INO80-like protein 1182 1432 - -
Pral1936g00002 1520 MobiDBLite consensus disorder prediction 33 62 - -
Pral1936g00002 1520 MobiDBLite consensus disorder prediction 1481 1520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1936g00002 Pral-Chr1936 11700 23579 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1936g00002 643 891 RAD5 or RAD16-like Gene Family AT1G61140 22.903 3.66e-12 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral1936g00002 SNF2_N 4.9e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1936g00002 K11665 - gmx:100780615 2420.58