LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral1933g00001	ATGATCTTGGTCCTTCCATTGGGTTTCACTAATTTGAGATACAAAAAAGACAGTGCAGGGAGAGTAACGTACAAGAACCTGTTGCAACTGGGGGACAAAGAGACAAGAACACTTGTAAACTTCATTACCCGTTTCAGCTTCATCATCAATGTACTAAATGAAACTCATGATGGGCATGGAGATGGCATCACATTCTTCTTGGCACACCCGAATTTTCCATTTCCAGTGCCCCCAGATGGCACTGGTATTGGTCTTGTGGGTCGTAGAGAAATGGGAGATCCAACTTATGCTGATGCACATCCATTTGTAGCAGTCGAGTTTGACACCATGCTTAATGCAAGAGATCCACCTTATGATCATGTGGGAATCAATGTAAAACAAATGTGGTCTCCTTACACAACACAATGGTACACTATGAATGACGGTAGAAAGTATGATGCTGAGATTACCTACAATTCTAGCTCATTGCAGTTAAGTGTCATGTTCACAGGATATAAGAATAACATCAAAATCAGACAAAATTATTCCCATCAGATTGATTTGAGAGACTACCTACCAGAACAAGTTCAGTTTGGGTTCTCATCAGCCACAGGACTTCAGTTTGAGTTACATACGCTATGCTCATGGGCCTTCAATTCAAGTCTTAATAAAGTGTGGGGAGGAGTGGTGCAAAAGAGTAAAAGCAATAATAAGCGTTTGGTCATTGGATTGAGCATTGGATCGGTTGTAGGGGTTGGTGGGTTATGCATAGCTTGGTTCCTCATATGGAAGTTAAATTGCAGGGCAAAAAAAGATGATCGCTTGGATGTTTCTTTGGACAGAGACTTTGAAAGTGTTGGACCAAAGAAGTTTTCCTATAATGAACTTGCGAGAGCCACAAACAACTTTGCAGAGGAACACAAACTTGGAGAAGGAGGTTTTGGTGGTGTCTACAAAGGATTCATGAGAGGCTTAAATACTTTTGTTGCAATTAAGAAGGTGTCCAAAGAATCTAGACAAGGGGTAAAGGAGTATGCCTCTGAAGTAAAGATCATCAGTCAATTAAGGCACAAGAATTTGGTACAATTGATGGGTTGGTGCCACCAGAAAAATGATCTTCTACTCATCTATGAGTTCATGCCAAATGGAAGCTTAGATTATCATTTATTTAAAAGCAAAGACCTCTTGACATGGCCAACTCGATACAATATTGCTCAAGGTTTAGCCTCAGCAGTGCTCTACTTGCATGAAGAGTGGGAGCAATGCGTAGTCCACAGAGACATAAAATCAAGCAATATTATGTTGGACTCAAATTTCAACACTAAGCTTGGAGATTTTGGATTAGCAAGACTCGTAGAACATGGCAAAGGGTTAACATCAACAATTGCAGCAGGAACAAAAGGATACATGGCTCCTGAATGTTTGGCGAGGGGCAAGGCCACAAGAGAATCTGACATGTACAGTTTTGGAGTTGTTGCTTTAGAAATAGCATGTGGGCGAAAACCAATTGACCCTAATGCTAGTGATGAACGAGTCATGATGGTGGAATGGGTGTGGGAACTCTATGGCAGAGGGGAGCTTCTTGAAGCAGTTGACAAAAGGCTTGATAATGGAGATTTTGATGAGCAAGAAGTTGAAAGGTTAATGATTATTGGGCTTTGGTCTGCTCATCCAGATTGCACTATGAGGCCTACAATTAGACAAGCACTTCATGTACTTAACTTTGAAGCTCCATTGCCCACTCTCCCACCAACAATGCCCCAACCAATGTATGCTGCTCCAACTTTTCCTGATATTGGTTCTTTAAACTTTTCATCTGCTTATGCTAGTTCTTCTGCAACCTATCAAGCTAGGCCTTCATCAAGTAATAGGTCATACACTGGATCCTCACAATCATCCACATCAGGCACAAATCAAGGAAGGAAAATAGTCGAGGAAGTTTCTCTTTAG	1929	0.4121	MILVLPLGFTNLRYKKDSAGRVTYKNLLQLGDKETRTLVNFITRFSFIINVLNETHDGHGDGITFFLAHPNFPFPVPPDGTGIGLVGRREMGDPTYADAHPFVAVEFDTMLNARDPPYDHVGINVKQMWSPYTTQWYTMNDGRKYDAEITYNSSSLQLSVMFTGYKNNIKIRQNYSHQIDLRDYLPEQVQFGFSSATGLQFELHTLCSWAFNSSLNKVWGGVVQKSKSNNKRLVIGLSIGSVVGVGGLCIAWFLIWKLNCRAKKDDRLDVSLDRDFESVGPKKFSYNELARATNNFAEEHKLGEGGFGGVYKGFMRGLNTFVAIKKVSKESRQGVKEYASEVKIISQLRHKNLVQLMGWCHQKNDLLLIYEFMPNGSLDYHLFKSKDLLTWPTRYNIAQGLASAVLYLHEEWEQCVVHRDIKSSNIMLDSNFNTKLGDFGLARLVEHGKGLTSTIAAGTKGYMAPECLARGKATRESDMYSFGVVALEIACGRKPIDPNASDERVMMVEWVWELYGRGELLEAVDKRLDNGDFDEQEVERLMIIGLWSAHPDCTMRPTIRQALHVLNFEAPLPTLPPTMPQPMYAAPTFPDIGSLNFSSAYASSSATYQARPSSSNRSYTGSSQSSTSGTNQGRKIVEEVSL	642

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral1933g00001	642	SUPERFAMILY	Protein kinase-like (PK-like)	280	587	IPR011009	-
	Pral1933g00001	642	SMART	serkin_6	296	566	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral1933g00001	642	ProSitePatterns	Protein kinases ATP-binding region signature.	302	326	IPR017441	GO:0005524
	Pral1933g00001	642	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	416	428	IPR008271	GO:0004672\|GO:0006468
	Pral1933g00001	642	Gene3D	-	7	220	-	-
	Pral1933g00001	642	Gene3D	Phosphorylase Kinase; domain 1	281	372	-	-
	Pral1933g00001	642	Pfam	Protein kinase domain	297	564	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral1933g00001	642	Gene3D	Transferase(Phosphotransferase) domain 1	373	586	-	-
	Pral1933g00001	642	Pfam	Legume lectin domain	15	214	IPR001220	GO:0030246
	Pral1933g00001	642	FunFam	L-type lectin-domain containing receptor kinase IX.1	281	372	-	-
	Pral1933g00001	642	PANTHER	-	17	577	-	-
	Pral1933g00001	642	MobiDBLite	consensus disorder prediction	608	642	-	-
	Pral1933g00001	642	ProSiteProfiles	Protein kinase domain profile.	296	575	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral1933g00001	642	CDD	lectin_legume_LecRK_Arcelin_ConA	7	215	IPR001220	GO:0030246
	Pral1933g00001	642	SUPERFAMILY	Concanavalin A-like lectins/glucanases	14	215	IPR013320	-
	Pral1933g00001	642	CDD	STKc_IRAK	302	567	-	-
	Pral1933g00001	642	ProSitePatterns	Legume lectins beta-chain signature.	103	109	IPR019825	-
	Pral1933g00001	642	FunFam	Lectin-domain containing receptor kinase A4.3	373	586	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral1933g00001	Pral-Chr1933	2482	5449	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral1933g00001	9	584	Receptor kinase-like Gene Family	AT5G10530	46.520	7.65e-169	495

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Pral1933g00001		Pkinase	1.1e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral1933g00001	-		-	cam:101491058	668.307