Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1928g00006 ATGACTAGTCTTGTTGGGCCCAAATTCTTCTCAGCAGTGAACAAGGCTGGAATGATGACGGAAGGGTATGGGTGGATAGTCACCGACGGGTTATCCAATGTGTTAGCCCCTCTGGGTCCGAAAGTGATGGATTCTATGCAAGGTATCGTGGGGATAAGGCCAAGACTGGAAAAGTCAAGAAGGCTTACAAGTTTCAGAAAAAGATGGAAAGCTTCGTCAATTAACTCAGGCAGTGTGTCTTCTTCCTTAACCTTGTTTGGACTTTGGGCTTATGACACAGTTTGGGCCATCGCCATGGCAGTAGAGTCTACGTTTGCAAATTATAAGGGTAATGACACACTTATAGATAGAATCCTAAGTACTAAATTTGAAGGCCTCTCTAGGAATTTCAATTTGAGTGAAGGACAACTCGAACCCTTAGAGCTTGAAGTATTCAATGTGGTAGGACGTGGTAGGACGCAAAGAGAGGATCATTGGACGTTGGAGCCCACAGAGAGGACTATTCCTCGACAATCATGGGAGTTCAAGAGGGAAACTGATGCCACCAATATGGCCGGGGTGGAAAGGCGGTCGTCAAATAGCACTCCGGATGTCCCTGGCTTTAGTATTGATGTGTTTCTGGAAGTGATAAAAGCTTTACCTTTTCCTCTTCCATATGAGTTTGTACCGTTGCGGATTAGAAGCAATGGGTCCTCTGGAGGGATTTTTAAGGAGCATGATGCTGTGGTTGGAGACATAACTATCGTAGCTAACAGTGCGGAACATGTTGACTTTACATTGCCGTTTTCAGAATCTGGGGTGTCAATGGTTGTTTCGATGAAGTACGATGAGAGACAAAACATGTGGATCTTCTTAAAGCCTTTGAGTCCAAGTCTTTGGCTGACCACTGGTGCAGCATTCGTCCTCCTCACAGGTATCACTATATGGCTTCACGAGCGGCAAACAAACCCAGAATTTCAAGCATCACCGCAGCAACAACTTGGGATGGTGTTCTGGTTTTCTTTCTCCACCTTAGTCTTTGCTCACAAGGAAAGATTAGAGAACAATTGGTCACGTTTTGTGCTGATCCTATGGGTATTTGTGGTGCTCATCATAACACAAAGTTACACTGCAAGTTTGACTTCCATGTTAACTGTTCAAAGATTGCAGCCTAAGTTCATCGATGTAAAAGAAATAAAAAATAATAATTACTCTGTGGGGTATCAGAAGGGGTCTTTCGTCAAAATGTTTCTGAAGAATCAGTTGGGATTCAAGGATGAGTCAAGGTTGAAACCATACGAGACGCCTGAAGAATATGATCGAGCTCTCGCTAGTGGTGAGGTTGCTGCTATCTTTGATGAAATCCCCTACGTGAGGCCCTTCCTCTCAAAATTCGGCTCCAAGTATGCTATGGTGGGGCCAACCTACCAAACTGCTGGTCTCGGCTTCGCATTTCCACCAAAATCTCCGTTGGTGTCTTATTTTTCGAGGGCAATCCTAAATGTGACCCAAGATGAAGAAAAATTTGCAAGGATTAAGGGCAAGCACTTCTCCGCCGGAATCATATCTGAAAGCGAAAGGGGATCATCAATCCCAAACAGTCCCGTTAGTCTAACTGTGTCCAGCTTTGGAGGGCTTTTCATCATCACAGGGGTCACTTCTGGGATTTCACTTTTGTTCTATTTGTTTGAGTTTGGTTACTCTCCGCTAGAAGGAAGATCTCTTTGGTTGTTGCAGTTAAACGCTCGAATAGTGAAGTGCGTGGATCAAAAGAATAGGTCTTTATCTTTGAACAGAAGCGATCTCAGATTATACCCTGCAAGTAATATTGTAGGGGGAGGTAGTGACGCCTTTCAACGTGAGCATCAGTCATCATAG 1857 0.4426 MTSLVGPKFFSAVNKAGMMTEGYGWIVTDGLSNVLAPLGPKVMDSMQGIVGIRPRLEKSRRLTSFRKRWKASSINSGSVSSSLTLFGLWAYDTVWAIAMAVESTFANYKGNDTLIDRILSTKFEGLSRNFNLSEGQLEPLELEVFNVVGRGRTQREDHWTLEPTERTIPRQSWEFKRETDATNMAGVERRSSNSTPDVPGFSIDVFLEVIKALPFPLPYEFVPLRIRSNGSSGGIFKEHDAVVGDITIVANSAEHVDFTLPFSESGVSMVVSMKYDERQNMWIFLKPLSPSLWLTTGAAFVLLTGITIWLHERQTNPEFQASPQQQLGMVFWFSFSTLVFAHKERLENNWSRFVLILWVFVVLIITQSYTASLTSMLTVQRLQPKFIDVKEIKNNNYSVGYQKGSFVKMFLKNQLGFKDESRLKPYETPEEYDRALASGEVAAIFDEIPYVRPFLSKFGSKYAMVGPTYQTAGLGFAFPPKSPLVSYFSRAILNVTQDEEKFARIKGKHFSAGIISESERGSSIPNSPVSLTVSSFGGLFIITGVTSGISLLFYLFEFGYSPLEGRSLWLLQLNARIVKCVDQKNRSLSLNRSDLRLYPASNIVGGGSDAFQREHQSS 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1928g00006 618 Pfam Ligand-gated ion channel 511 545 IPR001320 GO:0015276|GO:0016020
Pral1928g00006 618 Pfam Bacterial extracellular solute-binding proteins, family 3 199 510 IPR001638 -
Pral1928g00006 618 CDD GluR_Plant 187 510 - -
Pral1928g00006 618 Gene3D - 54 139 - -
Pral1928g00006 618 SUPERFAMILY Periplasmic binding protein-like II 194 509 - -
Pral1928g00006 618 Gene3D - 175 281 - -
Pral1928g00006 618 SMART GluR_14 178 512 IPR001320 GO:0015276|GO:0016020
Pral1928g00006 618 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 10 560 IPR015683 -
Pral1928g00006 618 SUPERFAMILY Periplasmic binding protein-like I 5 160 IPR028082 -
Pral1928g00006 618 FunFam Glutamate receptor 281 412 - -
Pral1928g00006 618 Gene3D - 7 159 - -
Pral1928g00006 618 Gene3D - 282 421 - -
Pral1928g00006 618 Pfam Receptor family ligand binding region 8 148 IPR001828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1928g00006 Pral-Chr1928 33483 36166 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1928g00006 1 560 Ion Channels AT2G29110 37.102 2.10e-114 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1928g00006 K05387 - qsa:O6P43_022275 559.296