Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1928g00005 ATGGCAGTAGAGTTTGCGTTTGCAAATTCTAAGGATTATGATACACTTCTAAATGAAATCCAAGATATAAAATTCCTAGGCCTCTCTGGGAATTTCAATTTGAGTGAAGGACAACTCGAACCCTTAGAGCTTAAAGTATTTAATGTGGTAGGACTCAAAGAGAGGGTCATTGGATGTTGGAGCCCACAGAGAGGACTATTCCACGACAAACAGTGGAGTTCAAGAGAGAAACTAATGTGGAATGGCGGTCTTCAGATAGAACTCCAGATGTTTCTGGAAGTGGTCAAAGCTTTACCTTTTCCTCTTGAATATGAGTTTCTCCCATTTCAGAAGAAGAACGAGGAAGCTACGTCCTATGAAGAGCTTGTTCGCCAAATTGAGACAAAGACATATGATGCTGTGGTCGGAGACATAACTATTACAGCTAGCCGTGCTGAACATGTTGACTTTACCTTGCCAGAAGCCGGAGTGTCAATGGTAGTTTCGATGAAGCACGATGAGAAACAAAACATGTGGATCTTCTTGAAGCCTTTGAGTCCAGGTCTTTGGCTGACCACAGGTGCAGCCTTCTTCCTCACTGGGATCATTATATGGCTTCACGAACATCGTACAAACACAGAATTTGAAGGATCCCTACAGCAACAACTTGGCATGATGTTCTGGTTTTCTTTCTCCACCTTTGTCTTTGCTCACAAGGAAAGATTAGTGAACAATTGGTCGCTTTTTGTGCTGATCTTATGGGTATTTGCGTTGCTAATCATAACACAAAGTTACACTGCAAGTTTAGGTTCCATGTTAACTGTACAAAGTTTGCAGCCTAGGTTCATCGATGTAAAAGACATAAAAAAGAATAATTACTGTGTGGGACGTCAGAATGGGTCCTTCGTCAAAAGGCTTCTGAAAAATCAACTGGGATTCACGGAGTCAAAGTTGAAGCCATACGAGACACCTGAAGAATATGATCGAGCTCTATCCAGTGGTGAGATTGCTACTTTCTTTGATGAAATCCCCTACGCGAAGCTCTTCCTCTCAAGATACGGCTCCAAGTATGCTATGGTGGGGCCAACTTACAAGACTGCTGGATTTGGCTTTGCATTTCCACTAAAATCTCCGTTGGTATCTTATTTTTCAAGGGCAATCCTAAATGTGACCCAAGATGAAGAAAAATTTGAGAGGATTAGGGCCAAGTACTTCTCCAGCAAAATCATATCTGAAGATGAAAGTGGATCATCAATCCCAAACAGTCAGACTAGTCTTACTGTGTCCAGCTTTGGAGGGCTTTTCATCATCACAGGGGTCGCTTCTGGGATTTCACTTCTGTTCTATTTGTTTAAGTTTGGGGACTGTCAGTCAGACGAAAGATCTCTTTGGTTGTTGCAGTTAAAGGCTCGAATATTGAAGTTCCTGGATCGAAAGGACAGCTCTTTATCTTTGAATGGAAGCGATGTCAAAGTATTCCCTGCAAGTAATAATATTGTAGAGGGAGATAGAGCCATTACTGCCCAGAATGAACAAGACCAGCTACCTTCTCCAGAGCATAGTGACAGCATTCAGCGTGCTCATCAGTCAGCACAAGAAGAAGTAGAGAGAAAAGAATAG 1599 0.4209 MAVEFAFANSKDYDTLLNEIQDIKFLGLSGNFNLSEGQLEPLELKVFNVVGLKERVIGCWSPQRGLFHDKQWSSREKLMWNGGLQIELQMFLEVVKALPFPLEYEFLPFQKKNEEATSYEELVRQIETKTYDAVVGDITITASRAEHVDFTLPEAGVSMVVSMKHDEKQNMWIFLKPLSPGLWLTTGAAFFLTGIIIWLHEHRTNTEFEGSLQQQLGMMFWFSFSTFVFAHKERLVNNWSLFVLILWVFALLIITQSYTASLGSMLTVQSLQPRFIDVKDIKKNNYCVGRQNGSFVKRLLKNQLGFTESKLKPYETPEEYDRALSSGEIATFFDEIPYAKLFLSRYGSKYAMVGPTYKTAGFGFAFPLKSPLVSYFSRAILNVTQDEEKFERIRAKYFSSKIISEDESGSSIPNSQTSLTVSSFGGLFIITGVASGISLLFYLFKFGDCQSDERSLWLLQLKARILKFLDRKDSSLSLNGSDVKVFPASNNIVEGDRAITAQNEQDQLPSPEHSDSIQRAHQSAQEEVERKE 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1928g00005 532 Coils Coil 109 129 - -
Pral1928g00005 532 SUPERFAMILY Periplasmic binding protein-like II 89 401 - -
Pral1928g00005 532 MobiDBLite consensus disorder prediction 496 532 - -
Pral1928g00005 532 CDD GluR_Plant 83 398 - -
Pral1928g00005 532 FunFam Glutamate receptor 171 301 - -
Pral1928g00005 532 Pfam Bacterial extracellular solute-binding proteins, family 3 117 399 IPR001638 -
Pral1928g00005 532 MobiDBLite consensus disorder prediction 496 518 - -
Pral1928g00005 532 Pfam Ligand-gated ion channel 400 434 IPR001320 GO:0015276|GO:0016020
Pral1928g00005 532 SMART GluR_14 71 400 IPR001320 GO:0015276|GO:0016020
Pral1928g00005 532 Gene3D - 79 170 - -
Pral1928g00005 532 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 11 446 IPR015683 -
Pral1928g00005 532 Gene3D - 171 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1928g00005 Pral-Chr1928 26850 30096 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1928g00005 15 527 Ion Channels AT2G29110 38.153 2.99e-107 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1928g00005 K05387 - qsa:O6P43_022275 489.574