Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1928g00003 ATGTCGAGCCAGATGAAAAAGAAGAGCTTTAACCTTTGCCTCTGCTGGTTTCGTTGTTTTTGTTCTTTGTTATGTTTTTTTGTAGAATCTTCGAAGGCCAAGGAAACACATATACCAGTAGGGGTGGTTGTTGATCTCAACTCCTCAGTTGGAAGAATGGCCATTCGCTGCATGAAAATGGCTCATGATGACTTCTATAAACAGTATTCTCATTACCAAACAAGATTGAATCTTCGAACCCGGGATTCTGAGAATAATGTCGTCCAAGCAGCATCTGCAGCTCTCGATTTGATAAAGAATGAAAACGTGCATGCAATTATCGGACCTTTATCTTCAGAACAAGCGAGTTTCGTAATACGACTTGGGCACAAATTTCAGGTGCCCATCGTCTCCTTTTCAGCCACAAGTCCATCTCTTCCTCCGCTCCGGAGCAAATTCTTCATAAGGACAGCACCAGATGATCGCTCACAGGTGCAGGCTATAGCTGCCATTGTTGAAGCTTACGGATGGCACGAAATCATCCCAATCTACGAAGACACCGAGTTTGGCAAGGGTCTGATCCCATACCTCACAGAGACCTTGGAGGAAGTTAACACCCAAGTGCCCTACAGAATTGCCATCGATCCGAATTCTGAGGAATATGAGATTTTGAATGAGCTTAAGAAGCTCAATCGGAGTCAAAAAATATTTCTTGTTCACATGACTAATCTTGTTGGTCCGAAATTCTTCTCAGCAGTGAACAAGGCTGGAAAGATGACAGAAGGGTATGGGTGGATAGTCACCAGTGGGTTATCCAATGTGTTAGACCCTTTGGCTCCGAAAGTGATGGATTCTATGCAAGGTGTCTTGGGGGTAAGGCCGAGACTGGAAAAGTCTAAAGGGCTTACAATTTTCAAAAATAGATGGAAAGCTTCGTCAATTAAATCTGGTAATGTGTCTTTTCCCTTAACCTTGTTTGGACTTTGGGCTTACGACACAGTTTGGGCGATAGCCATGGCAGTAGAGTCCAAGTTTGCAAATTCTAAGGATTATGATACACTTCTAAATGAAATCCAAGATATAAAATTCCTAGGCCTCTCTGGGAATTTCAATTTGAGTGAAGGACAACTCCAACCCTTGGAGCTTGAAGTATTCAATGTGGTAGGACGCAAGGAGAGGGTTATTGGATGTTGGAGCCCGCAGCGAGGACTATTCCACGAAAATCATTTGAGTTCAAGATTGAAACTAACGCCACCAATATGGCCGGGGGACGTAACAAATCAACCAACCAAGTTCAGAATTGGGGTCCCCGTAAGAAAGGGCTTTAATGAATTTTTGAAGGTAGAAACACGGCCTTCAAATAGTACTCCAGATGTTTCTGGCTTTACTATTGATTTGTTTAACGAAGTGCTCAAGCCTTTACCTTTTCCTTTTCCATATGAGTTTATCGCATTCCAGAAGAAGAATGGAGAAAGTACCGAGTCTTATGATGATCTTGTTCTTCAAATTGAGCAACAGAACTATGATGCTGTGGTTGGGGACATAACTATTGTAGCTAATCGTACGAACCATGTTGATTTCACGATGCCATATTCAGAATCTGGCGTGTCAATGGTTGTTCCGATGAAGCACGATGAGAGAGAAAATATGTGGATCTTCTTAAAGCCTTTGAGTCCAGGCCTTTGGCTGACCACAGGTGCAGCCTTTGTCGTCACAGGTATCATTATATGGCTTCACGAACGTCGTACAAACACAGAATTTCAAGGGTCCCCACAGCAGCAACTTGGCATCATGTTCTGGTTTTCTTTCTCCACCATAGTCTTTGCTCACAAGGAAAGATTAGTGAACAATTGGTCGCGTTTTGTTCTGATCTTATGGGTATTTGTGGTGCTCATCATAACACAAAGTTACACCGCAAGTTTGGCTTCCATGTTAACCGTACAAAGATTGCGGCCTAAGTTCATTGATGTGAATGAGATAAGAAAGAACAATTACTCTGTGGGGTATATGAAGGGGTCCTACATCAAAATGCTTCTGAAAAATCAATTGGGTTTCAAGGACGAGACAAAGTTGAAGCCGTACGAGACGCCTGAAGAATATGATCGAGCTCTCGCTAGTGGTGAGGTCGCTGCTATCTTTGATGAAATCCCTTACGTGAAGTTTTTCCTCTCAAAATACGGCTCCAAGTATGGTAGTGTGGGACCAACCTACAAAACTGGGGGATTCGGCTTTGCGTTTCCACTAAAATCTCCGCTGGTCCCTTATTTTTCGAGGGCAATCCTAAATGTGACTCAAGATGAAGAAAAGTTCGAAAGGATTAGGGGGAAGTACTTCTCCAGCGGAGTCACATATGAAGATGAATATGGATCATCAATCCCAAACAATCCCGTGAGTCTTACTGTGTCCAGCTTTGGAGGGCTTTTCATCATCACAGGGGTCGCTTCTGGGATTTCACTTCTGTTCTATTTGTTCAATTTTGGGTACTCTCGTTCAGAAGAAAGACTTCTTTGGTTGTTGCAGTTAAAGGCTCGAATAGTGAAGTGCTTGGAACGAAAGAATAGCTCTTTATCTGCGAACAGAAGTGATTCCAGAGTACATCCTGCAATTAATAATACTGTAGAGGGAGATACAGCCATAATTACTGCTTACCCTCGCTGCTGA 2640 0.4288 MSSQMKKKSFNLCLCWFRCFCSLLCFFVESSKAKETHIPVGVVVDLNSSVGRMAIRCMKMAHDDFYKQYSHYQTRLNLRTRDSENNVVQAASAALDLIKNENVHAIIGPLSSEQASFVIRLGHKFQVPIVSFSATSPSLPPLRSKFFIRTAPDDRSQVQAIAAIVEAYGWHEIIPIYEDTEFGKGLIPYLTETLEEVNTQVPYRIAIDPNSEEYEILNELKKLNRSQKIFLVHMTNLVGPKFFSAVNKAGKMTEGYGWIVTSGLSNVLDPLAPKVMDSMQGVLGVRPRLEKSKGLTIFKNRWKASSIKSGNVSFPLTLFGLWAYDTVWAIAMAVESKFANSKDYDTLLNEIQDIKFLGLSGNFNLSEGQLQPLELEVFNVVGRKERVIGCWSPQRGLFHENHLSSRLKLTPPIWPGDVTNQPTKFRIGVPVRKGFNEFLKVETRPSNSTPDVSGFTIDLFNEVLKPLPFPFPYEFIAFQKKNGESTESYDDLVLQIEQQNYDAVVGDITIVANRTNHVDFTMPYSESGVSMVVPMKHDERENMWIFLKPLSPGLWLTTGAAFVVTGIIIWLHERRTNTEFQGSPQQQLGIMFWFSFSTIVFAHKERLVNNWSRFVLILWVFVVLIITQSYTASLASMLTVQRLRPKFIDVNEIRKNNYSVGYMKGSYIKMLLKNQLGFKDETKLKPYETPEEYDRALASGEVAAIFDEIPYVKFFLSKYGSKYGSVGPTYKTGGFGFAFPLKSPLVPYFSRAILNVTQDEEKFERIRGKYFSSGVTYEDEYGSSIPNNPVSLTVSSFGGLFIITGVASGISLLFYLFNFGYSRSEERLLWLLQLKARIVKCLERKNSSLSANRSDSRVHPAINNTVEGDTAIITAYPRC 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1928g00003 879 SUPERFAMILY Periplasmic binding protein-like I 35 392 IPR028082 -
Pral1928g00003 879 FunFam Glutamate receptor 419 543 - -
Pral1928g00003 879 CDD PBP1_GABAb_receptor_plant 40 398 IPR044440 -
Pral1928g00003 879 Gene3D - 153 397 - -
Pral1928g00003 879 Pfam Receptor family ligand binding region 57 381 IPR001828 -
Pral1928g00003 879 FunFam Glutamate receptor 543 673 - -
Pral1928g00003 879 CDD GluR_Plant 424 771 - -
Pral1928g00003 879 PRINTS Metabotropic glutamate GPCR signature 106 132 IPR000337 GO:0004930|GO:0007186|GO:0016020
Pral1928g00003 879 PRINTS Metabotropic glutamate GPCR signature 157 173 IPR000337 GO:0004930|GO:0007186|GO:0016020
Pral1928g00003 879 PRINTS Metabotropic glutamate GPCR signature 138 157 IPR000337 GO:0004930|GO:0007186|GO:0016020
Pral1928g00003 879 Pfam Bacterial extracellular solute-binding proteins, family 3 451 772 IPR001638 -
Pral1928g00003 879 SMART GluR_14 426 773 IPR001320 GO:0015276|GO:0016020
Pral1928g00003 879 Pfam Ligand-gated ion channel 773 807 IPR001320 GO:0015276|GO:0016020
Pral1928g00003 879 SUPERFAMILY Periplasmic binding protein-like II 421 773 - -
Pral1928g00003 879 FunFam Glutamate receptor 153 306 - -
Pral1928g00003 879 PIRSF IGluLR_plant 7 870 IPR017103 -
Pral1928g00003 879 Gene3D - 419 543 - -
Pral1928g00003 879 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 40 842 IPR015683 -
Pral1928g00003 879 Gene3D - 58 372 - -
Pral1928g00003 879 Gene3D - 544 684 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1928g00003 Pral-Chr1928 18985 23593 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1928g00003 7 821 Ion Channels AT2G29120 42.459 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1928g00003 K05387 - qsa:O6P43_022275 926.006