Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1928g00001 ATGGCCATTCGCTGCATGAAAATGGCTCATGATGACTTCTATAAACACTATTCTCATTACCAAACAAGGCTTGATCTTCGAACCAGGGATTCTGAGAATGATGTTGTCAAAGCAGCATCTGCAGCTTTCCATTTGATGACGAATGAAAACGTGCATGCAATTATTGGACCTTTATTTTCGGAACAAGCGAGGTTCGTAATACAACTTGGGCACAGATATCAGGTGCCCATCGTCTCGTTTTCAGCCACAAGTCCATCTCTCACTCCAAACAGAAGCAAATTTTTCATTAGGACAGCACAAGATGATTGCTCACAGGTGCGGGCTATAGCTGCCATTGTTGAAGCTTACGGATGGCACGAAATCATCCCAATCTACGAAGACACCGAGTATGGCAAGGGTCTGATCCCATATATCACAGATGCCTTGGAGAAAGTTAACACGCGAGTGCCGTACAGAATTCCCATCGATCCAAATTCTGAGGAATATGACATTTTAGATGAGTTGAAGAAGCTCAATCAGAGTCGAAAAAGAATATTTCTTGTTCACATGACTAGTCTTATTGGTCCGAAATTCTTCTCAGCAGTGAACAAGGCTGGAATGATGACGGAAGGGTATGGGTGGATAGTCACCGGTGGATTATCCAATGTGTTAGACCCTTTGGCTCCGAAAGTGATGGATTCCATGCAAGGTGTCTTAGGGGTAAGGCCGAGATTGGAAAAGTCTAAAGGGCTTACAATTTTCAGAAATAGATGGAAAGCTTCGTCAATTAAATCTGGTAATGTGTCTTTTCCCCTAACCTTGTTTGGACTTTGGGCTTATGACACAGTTTGGGCGATAGCCATGGCAGTAGAGTCCAAGTTTGCAAGTTCTAAGGGTAATGATACACTTATAGATAGAATCCTAGATACTAAATTCGAAGGCCTCTCCGGGAATTTCCATTTAAGTGAAGGACAACTCGAAACCTTAGAGCTTGAAGTATTCAATGTGGTAGGACGCAAGGAGAGGGTTATTGGATATTGGAGCCCACAGCGAGGACTATTCCACAACAATCATTTGAGTTCAAGATTGAAACTAATGCCACCAATATGGCCGGGGGACGTAATAAATCAACCAACCAAGTTGAGAATTGGGGTCCCAGTAAGAAAGGGCTTTAATGAATTTTTGAAGGTGGAAACACGCCCTTCAAATAGTACTCCAGATGTTTCTGGCTTTACCATTGATGTGTTTAACGAAGTGCTCAATGCTTTACCTTTTCCTTTTCCATATGAGTTCCTCGCATTCCAGAAGAAGAATGGAGAAAGTACTGAGTCTTATGATGAGCTTGTTCTTCAAATTGAGAAAAAGGAGTATGATGCTGTGGTTGGGGACATAACTATTGTAGCTAATCGTGCAGACCATGTTGATTTCACGCTGCCATATTCAGAATCTGGCGTGTTAATGGTTGTTTCGATGAAGCACGATGAGAGAGAAAATATGTGGATCTTCTTAAAGCCTTTGAGTCCAGGTCTTTGGCTGACCACAGGTGCAGCCTTTGTCCTCACAGGTATCATTATATGGCTTCACGAACGTCGAACAAACACAGAATTTCAAGGGTCCCCACAGCACCAACTTGGCATCATGTTCTGGTTTTCTTTCTCCACCATAGTCTTTGCTCACAAGGAAAGATTAGTGAACAATTGGTCGCGTTTTGTTCTGATCTTATGGGTATTTGTGGTGCTCATCATAACACAAAGTTACACCGCAAGTTTGGCTTCCATGTTAACCGTACAAAGATTGCAGCCTAAGTTCATTGATGTGAATGAGATAAGAAAGAATAATTACTGTGTGGGTTGA 1833 0.4228 MAIRCMKMAHDDFYKHYSHYQTRLDLRTRDSENDVVKAASAAFHLMTNENVHAIIGPLFSEQARFVIQLGHRYQVPIVSFSATSPSLTPNRSKFFIRTAQDDCSQVRAIAAIVEAYGWHEIIPIYEDTEYGKGLIPYITDALEKVNTRVPYRIPIDPNSEEYDILDELKKLNQSRKRIFLVHMTSLIGPKFFSAVNKAGMMTEGYGWIVTGGLSNVLDPLAPKVMDSMQGVLGVRPRLEKSKGLTIFRNRWKASSIKSGNVSFPLTLFGLWAYDTVWAIAMAVESKFASSKGNDTLIDRILDTKFEGLSGNFHLSEGQLETLELEVFNVVGRKERVIGYWSPQRGLFHNNHLSSRLKLMPPIWPGDVINQPTKLRIGVPVRKGFNEFLKVETRPSNSTPDVSGFTIDVFNEVLNALPFPFPYEFLAFQKKNGESTESYDELVLQIEKKEYDAVVGDITIVANRADHVDFTLPYSESGVLMVVSMKHDERENMWIFLKPLSPGLWLTTGAAFVLTGIIIWLHERRTNTEFQGSPQHQLGIMFWFSFSTIVFAHKERLVNNWSRFVLILWVFVVLIITQSYTASLASMLTVQRLQPKFIDVNEIRKNNYCVG 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1928g00001 610 Pfam Ligated ion channel L-glutamate- and glycine-binding site 395 483 IPR019594 GO:0004970|GO:0016020
Pral1928g00001 610 Pfam Receptor family ligand binding region 5 330 IPR001828 -
Pral1928g00001 610 CDD PBP1_GABAb_receptor_plant 1 347 IPR044440 -
Pral1928g00001 610 FunFam Glutamate receptor 492 610 - -
Pral1928g00001 610 FunFam Glutamate receptor 368 492 - -
Pral1928g00001 610 SMART GluR_14 375 571 IPR001320 GO:0015276|GO:0016020
Pral1928g00001 610 Gene3D - 7 106 - -
Pral1928g00001 610 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 4 607 IPR015683 -
Pral1928g00001 610 Gene3D - 107 266 - -
Pral1928g00001 610 Gene3D - 493 610 - -
Pral1928g00001 610 Gene3D - 369 492 - -
Pral1928g00001 610 FunFam Glutamate receptor 101 255 - -
Pral1928g00001 610 SUPERFAMILY Periplasmic binding protein-like I 5 341 IPR028082 -
Pral1928g00001 610 Pfam Ligand-gated ion channel 503 604 IPR001320 GO:0015276|GO:0016020
Pral1928g00001 610 SUPERFAMILY Periplasmic binding protein-like II 366 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1928g00001 Pral-Chr1928 3782 6125 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1928g00001 1 610 Ion Channels AT2G29120 42.724 2.08e-174 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1928g00001 K05387 - qsa:O6P43_022275 730.324