Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1924g00005 ATGGGGAGAGGGAAAATTGAAATTAAGAAGATAGAGAATTTGAATAATAGGCAGGTCACCTTCTCCAAGCGACGTAATGGATTGCTCAAGAAGGCCAAGGAGTTGTCCGTTCTGTGTGATGCAGAGGTTGCTGTCATCATTTTCTCCAGCACCGGCAAGCTTTATGAGTTTTCCAACACAAGCATGGAGCACACCCTTTCAAGGTACACTAAAGGAGTGGAATTGGATTTTACAGAGCAACCTTGTGAGGTGCCACCGGCTGAGGAGACAGAGTCTGATGCAGACCTTCTAAGGGATGAAATAAGAAAGCTTCGTTTAGCATACTTAAGAATGATGGGGAAGGAGCTTGATGGATTGAAATTTAAAGAGCTGCAGAAGTTGGAAAATCAACTGAGTGAAGGGATACTATCTGTTAAAGAAAAGAAGGAACAATTACTTCTAGATCAACTAGGGAGGTCAAGATTACAGGAGCAACAAGCCATGCTGGAGAATGAAGCCCTGCGCAAACAAATTGAGGAGATGCAGAATAAATCAAACACAACACACTTTGTTTATTTCAATACCTTAGACAGCAGGTTCTGCATCAACGATGGTTCCAACCCCATTTTCCATTGTGCCTCCCATGAAAGAGAAGACCTTTCTGACACTTCATTGCAGTTAGGTTGTGGGGTGTCGTATAGGTTGTCAACAGAATTTGGTCGGAAGAGGAAAGCACCGAAAGTAGAAGCCGGCAACGACTCAGCCGCCAGTCAACTGGCCTCTGCATCCCAAAACATTCCCTAG 783 0.4419 MGRGKIEIKKIENLNNRQVTFSKRRNGLLKKAKELSVLCDAEVAVIIFSSTGKLYEFSNTSMEHTLSRYTKGVELDFTEQPCEVPPAEETESDADLLRDEIRKLRLAYLRMMGKELDGLKFKELQKLENQLSEGILSVKEKKEQLLLDQLGRSRLQEQQAMLENEALRKQIEEMQNKSNTTHFVYFNTLDSRFCINDGSNPIFHCASHEREDLSDTSLQLGCGVSYRLSTEFGRKRKAPKVEAGNDSAASQLASASQNIP 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1924g00005 260 MobiDBLite consensus disorder prediction 237 260 - -
Pral1924g00005 260 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral1924g00005 260 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral1924g00005 260 Coils Coil 124 144 - -
Pral1924g00005 260 Coils Coil 152 177 - -
Pral1924g00005 260 Gene3D - 14 74 IPR036879 GO:0003677|GO:0046983
Pral1924g00005 260 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral1924g00005 260 Coils Coil 87 107 - -
Pral1924g00005 260 Pfam K-box region 88 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral1924g00005 260 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Pral1924g00005 260 FunFam MADS-box transcription factor MADS-MC 13 81 - -
Pral1924g00005 260 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 167 - -
Pral1924g00005 260 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral1924g00005 260 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Pral1924g00005 260 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pral1924g00005 260 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral1924g00005 260 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral1924g00005 260 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1924g00005 Pral-Chr1924 16572 19154 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1924g00005 1 253 MADS-box Gene Family AT5G13790 46.768 6.88e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral1924g00005 K-box 3.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1924g00005 - - gmx:100792278 315.079