Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1924g00004 ATGGGGAGAGGGAAAATTGAAATTAAGAAGATAGAGAATTTGAATAATAGGCAGGTCACCTTCTCCAAGCGACGTAATGGATTGCTCAAGAAGGCCAAGGAGTTGTCCGTTCTGTGTGATGCAGAGGTTGCTGTCATCATTTTCTCCAGCACCGGCAAGCTTTATGAGTTTTCCAACACAAGCATGGAGCACACCCTTTCAAGGTACACTAAAGGAGTGGAATTGGATTTTACAGAGCAACCTTGTGAGGTGCCACCGGCTGAGGAGACAGAGTCTGATGCAGACCTTCTAAGGGATGAAATAAGAAAGCTTCGTTTAGCATACTTAAGAATGATGGGGAAGGAGCTTGATGGATTGAAATTTAAAGAGCTGCAGAAGTTGGAAAATCAACTGAGTGAAGGGATACTATCTGTTAAAGAAAAGAAGGAACAATTACTTCTAGATCAACTAGGGAGGTCAAGATTACAGGAGCAACAAGCCATGCTGGAGAATGAAGCCCTGCGCAAACAAATTGAGGAGATGCAGAATAAATCAAACACAACACACTTTGTTTATTTCAATACCTTAGACAGCAGGTTCTGCATCAACGATGGTTCCAACCCCATTTTCCATTGTGCCTCCCATGAAAGAGAAGACCTTTCTGACACTTCATTGCAGTTAGGGTTGTCAACAGAATTTGGTCGGAAGAGGAAAGCACCGAAAGTAGAAGCCGGCAACGACTCAGCCGCCAGTCAACTGGCCTCTGCATCCCAAAACATTCCCTAG 765 0.4405 MGRGKIEIKKIENLNNRQVTFSKRRNGLLKKAKELSVLCDAEVAVIIFSSTGKLYEFSNTSMEHTLSRYTKGVELDFTEQPCEVPPAEETESDADLLRDEIRKLRLAYLRMMGKELDGLKFKELQKLENQLSEGILSVKEKKEQLLLDQLGRSRLQEQQAMLENEALRKQIEEMQNKSNTTHFVYFNTLDSRFCINDGSNPIFHCASHEREDLSDTSLQLGLSTEFGRKRKAPKVEAGNDSAASQLASASQNIP 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1924g00004 254 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral1924g00004 254 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Pral1924g00004 254 FunFam MADS-box transcription factor MADS-MC 13 81 - -
Pral1924g00004 254 Coils Coil 124 144 - -
Pral1924g00004 254 Coils Coil 152 177 - -
Pral1924g00004 254 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral1924g00004 254 Coils Coil 87 107 - -
Pral1924g00004 254 Pfam K-box region 88 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral1924g00004 254 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 167 - -
Pral1924g00004 254 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral1924g00004 254 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Pral1924g00004 254 Gene3D - 14 74 IPR036879 GO:0003677|GO:0046983
Pral1924g00004 254 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pral1924g00004 254 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral1924g00004 254 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral1924g00004 254 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral1924g00004 254 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral1924g00004 254 MobiDBLite consensus disorder prediction 229 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1924g00004 Pral-Chr1924 16572 19154 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1924g00004 1 230 MADS-box Gene Family AT5G13790 49.791 1.65e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral1924g00004 K-box 3.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1924g00004 - - gmx:100792278 321.627