Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1923g00002 ATGGCTTCCTCTTCCTCTGACCCGAGCAAGTCTGAAGTTGGCGGCGGCGGCGGCAGTGCAGAGGTTTCGGATGTAGCGATGGCAAATGATAAACTCTTACTCTATAGGGGATTGAAGAAAGCGAAGAAAGAAAGAGGGTGTACAGCTAAAGAGCGCATCAGCAAGATGCCTCCTTGTGCTGCGGGGAAACGCAGCTCCATATATCGTGGTGTCACCAGGCATAGATGGACTGGTCGTTATGAGGCCCATCTTTGGGATAAAAGTACGTGGAACCAGAATCAGAATAAAAAGGGAAAACAAGTCTACTTGGGTGCATATGATGACGAGGAGGCTGCAGCTAGAGCGTATGACCTTGCTGCTCTAAAATATTGGGGTCCAGGGACTCTAATCAACTTTCCAGTGACTGATTATACGAGAGATCTTGAAGAAATGCAAAATGTTTCAAGAGAGGAATACCTTGCGTCTTTACGGCGGAAGAGCAGTGGTTTTTCTAGAGGAATCTCTAAATATCGGGGACTCTCTAGCCGATGGGAGCCATCATATGGTAGAATGGCTGGATCTGATTACTTCAACAGTATACATTATGGGACCGGTGATGATTCAGCGGCAGAAAGCGAATATGGTAGTGGTTTCTGCATAGAACGAAAGATTGATTTAACAAATTACATCAAGTGGTGGGGATCCAATAAAAGTCGCCAACCTGATGCTGGAACAAAATCATCAGAAGAAAAAAAGCAAGGATTTGCGGGAGATATTTGTGGTGAGTTCAAAACGATGGAACAGGAACTCCAACCCACTGAGCCATACCAGATGCCACAGTTAGGCTTGCCCCATGATAGGAAAAAGCATGAAAGTTCTGCAGTCTCTGCCTTGAGTATTTTATCAAGGTCAGCAGCCTACAAGAGCCTGCAGGAGAAGGCGTCAAGGACACAAGAAAATTACACTGATAACGATGAGGATGAGAACAAAAATACTATCAATAAGTTAGACCAGGGCAAGGCACTTGACAGATCACCACATCATAATGGTGTGGATGAAAGACTTGACATTGCAATGGGAATGAGTGGGGCATTGTCTATTCAAAGAAATGTTTACCCATTGACTTCATTCTTGTCTGCACCACTTTTGACCGCTTATAATACTGCCGACCCCATGGTAGATCCTGTTCTCTGGACATCTCTTGTTCCTATGCTTCCTGCTGGCCTTTCTCGGACAGCCGAGGTTACCAAGACCGAGAGCAGTTCAACTTACACCATATTTCAGCCAGAGGAGTGA 1275 0.4549 MASSSSDPSKSEVGGGGGSAEVSDVAMANDKLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGISKYRGLSSRWEPSYGRMAGSDYFNSIHYGTGDDSAAESEYGSGFCIERKIDLTNYIKWWGSNKSRQPDAGTKSSEEKKQGFAGDICGEFKTMEQELQPTEPYQMPQLGLPHDRKKHESSAVSALSILSRSAAYKSLQEKASRTQENYTDNDEDENKNTINKLDQGKALDRSPHHNGVDERLDIAMGMSGALSIQRNVYPLTSFLSAPLLTAYNTADPMVDPVLWTSLVPMLPAGLSRTAEVTKTESSSTYTIFQPEE 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1923g00002 424 ProSiteProfiles AP2/ERF domain profile. 67 133 IPR001471 GO:0003700|GO:0006355
Pral1923g00002 424 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 30 304 - -
Pral1923g00002 424 SMART rav1_2 67 139 IPR001471 GO:0003700|GO:0006355
Pral1923g00002 424 MobiDBLite consensus disorder prediction 1 22 - -
Pral1923g00002 424 Gene3D AP2/ERF domain 67 135 IPR036955 GO:0003700|GO:0006355
Pral1923g00002 424 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700|GO:0006355
Pral1923g00002 424 PRINTS Ethylene responsive element binding protein signature 115 135 IPR001471 GO:0003700|GO:0006355
Pral1923g00002 424 SUPERFAMILY DNA-binding domain 66 134 IPR016177 GO:0003677
Pral1923g00002 424 Pfam AP2 domain 67 125 IPR001471 GO:0003700|GO:0006355
Pral1923g00002 424 MobiDBLite consensus disorder prediction 304 324 - -
Pral1923g00002 424 FunFam AP2-like ethylene-responsive transcription factor 66 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1923g00002 Pral-Chr1923 14894 19024 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1923g00002 28 408 AP2-EREBP Transcription Factor Family AT2G41710 66.237 3.70e-168 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral1923g00002 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1923g00002 K09285 - qsa:O6P43_010133 708.368