Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1920g00003 ATGGGAAAACTTGCTTCCTCTGTTTTCGTTCTCTTCCTTCACTACTTTTTGGGCTCCTTGGCATGGAGCAAGGGGAATTCCACCGTCGACAAATCTGCACTCCTTGCTTTTAAGGCATCTATTGTGGATCCATATAATCTCCTAGCCAACTGGTCTGACTCTTCTGCTTCTTCTCCCTGTGATTGGGTTGGTGTTGGATGCAATACTCATCACGGAAGGGTTCATTACTTGAATCTTAGTGATACAGGTCTTAAAGGCATCATATCTGCACAGCTAGGAAATCTATCATTCCTTGTTGAACTTGATCTAAGCATCAATGATTTTTACGGTGAGATACCAAAAGAGTGGGTACAATTGCGTAGGTTGAAACTGCTCAACTTGAGCTACAATGACTTTCATGGGCAAGTTCCAACATGGATAGGAGGTTTATCTATGCTTGAGTACCTGAGTTTTCGAAATAATAGTCTTATTGGATCTATTCCATTATCTCTATTCAATTTATCAAGGTTAGAGATCTTGGATTGGAATTCTAACTTCATTCAAGGAAGCATTCCACTTGAGATAGGAAGTTTGAAGCACTTGAAGATGTTACAAATTGCAGGGAACAAGCTTTCTGAAACTATTCCACCTACAATTTTCAGCCTATCTTCACTTCAAAAATTGAATTTGTCTCATAACACTTTGTCAGGTACTATACCATCTTCATTATTTAATAATTCAGAGCTGCAAGAATTGTCACTCTCCCAAAATCAATTACATGGCAGTCTCCCAACCAATGTGTGTATTGGGCTCCCAAGACTTGAATTTTTCTCTGTGGCTGAAAACGATCTCTCCGGTGAAATGCCATCTAGTTGGCATCAATGCAAAGAACTGAAAGTTTTGGAATTAGGTTTTAACAGATTCAACAGAGGATACATACCAAGCGACATTGGAAATTTACCCAATCTTCAAGTTTTGAATCTCATGAACAACAACTTGGAAGGAGAAATTCCATCATCTCTCTTCACCAATTCTTCTTTAAGAATATTACGTTTAAGACAAAACGGTTTCACTGGGAGTATACCAACTCTTGGGAATCAGACAATGCTGGAAACTTTAAATCTAAATAACAACTCCTTTTCAGGTGAAATTCCTCAATCTATCTACAACACACCTTCTTTGAGAATAGTTGACTTTACCTATAACTATTTAAAGGGCAATTTGCCAGAAGAGATGTGCTATAGACTCCCTTTACTTGAAGTTTTTGCAGTTTCTCTTAATCATTTTGAGGGAAGTATTCCAAAGTCAATAAGTAACTGCACATATCTGCGAAGCTTATTTTTGAATGATAACTCATTTTCAGGTCTTATACCCAAGGAGATAGGCAATCTTGATAAGCTTGAAGATTTGATTTTAGTAACTAATCATTTCAGTGGATCCATTCCTTCTCATATATTCAACATTACGACATTGAGACGTGTCTACCTTCAAGATAATTTCTTTTCTAGCTTTCTCCCATCAAATTTAGGAATTGGCCTTCCCAATCTGCAGGAACTAATGTTGGGACAAAATCAATTTATTGGACAAATTCCAATCAGCATCTCAAATGCTTCTAAGCTCACTACTGTAGATCTATCATGGAATAAGTTTAGTGGAGATATACCCACTACGCTTGGGAATCTAACAAACATGATCGCATTATATTCTGAGGAGAATGATTTGAATGGGATGATTCCAAGTACAATTAACAGACTGCAAAACCTTCAACATTTAAGTCTTAGCAACAACAGATTGCAAGGGTCCATCATAAATGAATTGTGCCAAATCAAAAGTTTGAGTGAATTGTATCTAGCCAACAACATGTTTTCAGGAATGATTCCAAAGTGCTTCACAAATACTTCTTTGCGGAGGTTGAATTTAAGCTCTAACAAATTGATTTCTCATATTCCTTCTTCGCTTTGGAGTCTTGAAGATATGTTATTCTTAGACTTATCCTCCAATGCATTGGGTGGAAGAATTTCTCTAGAGGTGTCAAACTTGAAAGCAATTATACTTTTCAATTTGTCAAGAAATCAAATTTCAGGAAACATCCCGACAACTATGGGCAATTTGAAAACATTGCAAAATCTATCTTTGGCTCATAACAAACTCCAAGGGTCTATTCCTGAATCATTTAGTGGCATGATAAGTATGGAATCCTTGGATCTCTCCCAAAATTATTTGTCTGGAGTGATTCCAAAGTCCTTAGAGTTACTTGTCCAAATGGAGTACATTAATCTTTCATACAATTTATTGCATGGAGAAATTCCAAATGGTGGGCCTTTTCCTAATTTTACATATGAATCTTTTATGATGAATGAAGATCTTTGTGGGGAGCCCCAGCCAAACGTCCGTCCATGCAAAAAAGGAAACAAGCACATCTCAACTAAAATATTGCTTGTCATCAAATGCTTATTGCCTATAGCTTCTGCAATCATTTTGGTTGCCTCATGCCTGATGTTTCTTAAGTTTAAGAAGGGTCATGTTAGTCATGAGATGAATAATAGAGACTCCTTAAATTTGGATACAGTGGCTAAGATATCCTATTATGATCTTTTGCAAGCAACAAATGGGTTTGATGAGAGTAATTTTCTTGGCAAGGGAAGTTTTGGATTAGTCTACAAAGGCATTCTTTCAAATGGAAAGATAGTTGCTGCAAAAGCATTCAACTCAAACTTGCAAGAAGCATTAAAAAGTTTTGACATTGAATGTGCTGCCATATGCAATTTACGTCATCGAAACCTTATTAAGATCATTAGCAGTTGCTCAAATGGTGATTTTAAATCTCTCGTAATGGAATTCATGCCAAATGGAAGTCTTGAGAGATGGTTGTACTCCCATAACTACTGTTTAGATATAGTGCAAAGATTGGACATAATGATTGATGTGGCATCAGCGTTGGAGTATCTTCATTATGGTTCTCCTATCCCAGTGGTCCATTGTGATGTGAAGCCGAGCAACGTTTTATTGGATGAAGATATGGTGGCCCATTTAAGTGACTTCGGAATTGCCAAATTGCTAATTAACCGTCAATCAGAAATTTATACAGAAACTTTGGCTACAGTTGGTTATATGGCACCAGAGTATGGATCAAAAGGAGCAGTTTCAATGAAAGGAGACGTATACAGCTTTGGTATTTTGCTTATGGAAATGCTTACAAGGAAGAAGCCAACAGATGAGATGTTTACTCAAGATCTGAATCTGAAAGAATTTGTTAGCAAATCAACGCCACATTCAATCATCAATATTGTAGATGTCAATTTGCTGCACACAAGCAACCAAAAAATTGGTAATATATTGCTGCATATATCATCAATTTTTGAGTTAGCCCTAAATTGTTGCGATGATGCACCTGAGGCAAGACCTAATATGTCAGAGGTTGTGGTGTCACTGGGAAAAACCAAGGTCATATTAATGCAAAATATTCAAGGAACCACTAGCTTGTTGGATAAATGTTAA 3477 0.3681 MGKLASSVFVLFLHYFLGSLAWSKGNSTVDKSALLAFKASIVDPYNLLANWSDSSASSPCDWVGVGCNTHHGRVHYLNLSDTGLKGIISAQLGNLSFLVELDLSINDFYGEIPKEWVQLRRLKLLNLSYNDFHGQVPTWIGGLSMLEYLSFRNNSLIGSIPLSLFNLSRLEILDWNSNFIQGSIPLEIGSLKHLKMLQIAGNKLSETIPPTIFSLSSLQKLNLSHNTLSGTIPSSLFNNSELQELSLSQNQLHGSLPTNVCIGLPRLEFFSVAENDLSGEMPSSWHQCKELKVLELGFNRFNRGYIPSDIGNLPNLQVLNLMNNNLEGEIPSSLFTNSSLRILRLRQNGFTGSIPTLGNQTMLETLNLNNNSFSGEIPQSIYNTPSLRIVDFTYNYLKGNLPEEMCYRLPLLEVFAVSLNHFEGSIPKSISNCTYLRSLFLNDNSFSGLIPKEIGNLDKLEDLILVTNHFSGSIPSHIFNITTLRRVYLQDNFFSSFLPSNLGIGLPNLQELMLGQNQFIGQIPISISNASKLTTVDLSWNKFSGDIPTTLGNLTNMIALYSEENDLNGMIPSTINRLQNLQHLSLSNNRLQGSIINELCQIKSLSELYLANNMFSGMIPKCFTNTSLRRLNLSSNKLISHIPSSLWSLEDMLFLDLSSNALGGRISLEVSNLKAIILFNLSRNQISGNIPTTMGNLKTLQNLSLAHNKLQGSIPESFSGMISMESLDLSQNYLSGVIPKSLELLVQMEYINLSYNLLHGEIPNGGPFPNFTYESFMMNEDLCGEPQPNVRPCKKGNKHISTKILLVIKCLLPIASAIILVASCLMFLKFKKGHVSHEMNNRDSLNLDTVAKISYYDLLQATNGFDESNFLGKGSFGLVYKGILSNGKIVAAKAFNSNLQEALKSFDIECAAICNLRHRNLIKIISSCSNGDFKSLVMEFMPNGSLERWLYSHNYCLDIVQRLDIMIDVASALEYLHYGSPIPVVHCDVKPSNVLLDEDMVAHLSDFGIAKLLINRQSEIYTETLATVGYMAPEYGSKGAVSMKGDVYSFGILLMEMLTRKKPTDEMFTQDLNLKEFVSKSTPHSIINIVDVNLLHTSNQKIGNILLHISSIFELALNCCDDAPEARPNMSEVVVSLGKTKVILMQNIQGTTSLLDKC 1158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1920g00003 1158 Pfam Leucine Rich Repeat 363 381 IPR001611 GO:0005515
Pral1920g00003 1158 SMART serkin_6 865 1144 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1920g00003 1158 ProSitePatterns Protein kinases ATP-binding region signature. 871 893 IPR017441 GO:0005524
Pral1920g00003 1158 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 504 797 - -
Pral1920g00003 1158 Gene3D Ribonuclease Inhibitor 357 500 IPR032675 -
Pral1920g00003 1158 ProSitePatterns Serine/Threonine protein kinases active-site signature. 984 996 IPR008271 GO:0004672|GO:0006468
Pral1920g00003 1158 SUPERFAMILY Protein kinase-like (PK-like) 848 1137 IPR011009 -
Pral1920g00003 1158 SUPERFAMILY RNI-like 418 763 - -
Pral1920g00003 1158 Pfam Protein kinase domain 867 1134 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1920g00003 1158 Gene3D Transferase(Phosphotransferase) domain 1 941 1151 - -
Pral1920g00003 1158 Gene3D Ribonuclease Inhibitor 27 197 IPR032675 -
Pral1920g00003 1158 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 406 498 - -
Pral1920g00003 1158 ProSiteProfiles Protein kinase domain profile. 865 1143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1920g00003 1158 Gene3D Ribonuclease Inhibitor 198 356 IPR032675 -
Pral1920g00003 1158 Gene3D Ribonuclease Inhibitor 501 794 IPR032675 -
Pral1920g00003 1158 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 27 188 - -
Pral1920g00003 1158 SUPERFAMILY RNI-like 77 413 - -
Pral1920g00003 1158 ProSiteProfiles Leucine-rich repeat profile. 627 649 IPR001611 GO:0005515
Pral1920g00003 1158 PANTHER RECEPTOR-LIKE PROTEIN 55 623 1139 - -
Pral1920g00003 1158 SMART LRR_typ_2 578 601 IPR003591 -
Pral1920g00003 1158 SMART LRR_typ_2 506 530 IPR003591 -
Pral1920g00003 1158 SMART LRR_typ_2 602 625 IPR003591 -
Pral1920g00003 1158 SMART LRR_typ_2 626 649 IPR003591 -
Pral1920g00003 1158 SMART LRR_typ_2 191 215 IPR003591 -
Pral1920g00003 1158 SMART LRR_typ_2 143 167 IPR003591 -
Pral1920g00003 1158 SMART LRR_typ_2 721 744 IPR003591 -
Pral1920g00003 1158 SMART LRR_typ_2 313 337 IPR003591 -
Pral1920g00003 1158 SMART LRR_typ_2 457 481 IPR003591 -
Pral1920g00003 1158 SMART LRR_typ_2 240 263 IPR003591 -
Pral1920g00003 1158 SMART LRR_typ_2 216 239 IPR003591 -
Pral1920g00003 1158 SMART LRR_typ_2 697 720 IPR003591 -
Pral1920g00003 1158 FunFam Leucine-rich repeat receptor protein kinase EMS1 208 305 - -
Pral1920g00003 1158 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 941 1149 - -
Pral1920g00003 1158 Pfam Leucine rich repeat 699 758 IPR001611 GO:0005515
Pral1920g00003 1158 Pfam Leucine rich repeat 193 252 IPR001611 GO:0005515
Pral1920g00003 1158 Pfam Leucine rich repeat 604 662 IPR001611 GO:0005515
Pral1920g00003 1158 Gene3D Phosphorylase Kinase; domain 1 828 940 - -
Pral1920g00003 1158 FunFam Leucine-rich repeat receptor protein kinase EMS1 306 403 - -
Pral1920g00003 1158 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1920g00003 Pral-Chr1920 66731 74475 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1920g00003 1 1141 Receptor kinase-like Gene Family AT5G46330 33.333 0.0 577
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Pral1920g00003 Pkinase 6.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1920g00003 - K13420 pcin:129285519 1110.9