Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1920g00002 ATGAGAAAACCTTCTTGCTCTGTTTTCATCTTCTTACTTCATTGCTTGATGATCTCTTCAACTTGGAGTGAGACTGATATCACCACTGACAAACATGCACTTCTTGCCTTTAAATCCTTCGTCACTTTGGATCCATACAATCTGTTGGCCAACTGGTCGGCGTCTTCTTCTCCATGCAAGTCGGCGTCCTCTTCTCCATGCAACTGGCTAGGAAATCTCTTATTTCTTGCTGAACTTGATCTCAGTAACAACAATTTTCGTGGTCAAATGCCAAAAGAACTAGTTCAATTACATGGATTGAAGTTCTTTAACTTGAGTTACAATGACCTTCATGGACACGTTCCAACATGGATAGGAGCTTTATCTACACTTCAACACTTGGATCTTTGCAATAACAGTTTTAGTGGATTTATTCGGCCACGTTCATCCAATCTATCAAGGTTGGAGACTTTGCATTGGAAATATAATTTCACTGAAGGGACCATTCCACCTGAGATAGGAAGTCTAGGTAACTCGAAGATTTTACGACTTGCAAAGAACAGGCTTTCTGGAGCAGTCCCACGACCACTTTCCAACTTGTCTTCACTTGAAAGACTGAGCTTGTCTTATAACATTTTATCAGGTGTCTCTTTGATAGTTGGAGGCGTTCCCAAGGAGATTGGTAATCTTCCACAGCTACAGCTACTATATCTTTCAAATATTCAACTTTCCAACTCTATACCATCCGCTATATTTAATAGTTCAATGCTACAATTCATTGAACTTGACAACAATAACCTCTCTGGTAGCCTTCCAGTAAAGTGCAAAGAATTATCAGAGTTAAATCTAGGCAATAACAGATTCAAGGAAGGAAGCATCCCAAGTGACATTGGAAATTTGACCAACCTCCAATACTTATATCTCAGCAACAACAGCTTGCAAGGATGGTCCATACTTGCAGCTGTAATTGATTTGCTAAACATGGGAAAACTTGCTTTCCTTGTTTTCATTCTCTTCCTTCACTACTTTATGGCCTCCTTGGCATGGAGCCAGGGAAATTCCACTGTCGACATATCTGCACTCCTTGCTTTTAAAGCATCTACTTCGGATCCATACAATCTCTTGGCCAACTGGTCTACTCTTCTTCTTCTCCATGTGATTGGGTCGGTGTTGAATGCAATACACGCCACAGGGTTGGAGATCTTGGATTGGAATTCCAACTTCATTCAAGGAAGCATTCCACCTGAGATAGGAAGTTTGAAGCACTTGAAGATGTTACAAATTGCAGGGAACAAGCTTTCTGAAACCATTCCACCGACAATTTTCAACTTATCTTCACTTCAAAAATTGAATTTGTCTCATAATACTCTGTCAGGAGAAATTCCATCATCTCTCTTCAGCAATTCTTCTTTAAGAATATTACGTTTAAGACAAAACGGTTTAAATGGGAGTATACCAACTCTTGGGAATCAGACAATGCTGGAAACTTTAGTTCTAAATAACAACTCCTTTTCAGGTGAAATTCCTCAATCTGTCTACAGCACACCTTCTTTGAGAATAGTTGACTTTACCTATAACCGTTTAAAGGGTAATTTGCCAGAAGATATGTGCTATAAACTCCCTTTACTTGAAGTTTTTGAAGTTGCTTTTAATCATTTTGATGGACGCATTCCAAAGTCAATAAGTAACTGCACATATTTGCGAGGCTTATTTTTGGATCAGAACTTCTTTTCAGGTCTTATACCCAAGGAGATTGGCAATCTTGATAAGCTTGAAGATTTGATTTTAGTAACTAATCATTTCAGTGGATCCATTCCTTCTCATATATTCAACATTACGACATTGAGACGTGTCTACCTTCAAGAAAATTTCTTTTCTAGCTTTCTCCCATCAAATTTAGGAATTGGCCTTCCCAATCTGCAGGAACTAATGTTGGGACAAAATCAATTTATTGGACAAATTCCAATCAGCATCTCAAATGCTTCTAAGCTCACTATTGTAGATCTATCATGGAATAAGTTTAGTGGAGATATACCCACTACACTTGGGAATCTAACAAACATGATCGCATTATATTCTGAGGAGAATGATTTGAATGGGATGATTCCAAGTACAATTAATGGACTGCAAAGCCTTCAACATTTAAGTCTTAGCAACAATAGATTGCAAGGGTCCATCATAAATGAATTGTGCCAAATCAGAAGTTTGAGTGAATTGTATCTAGCCGGCAACATGTTTTCAGGGATGATTCCAAAGTGCTTCACAAATACTTCTCTGCGGAGGTTAGATTTAAGCTCTAACAAATTGATTTCTCATATTCCTTCTTCGCTTTGGAGTCTTGAAGATATGTTATTCTTAGACTTATCCTCCAATGCATTGGGTGGAAGAATTTCTCCTGAGGTGTCAAACTTGAAAGCAATTATACTTTTCAATTTGTCAAGAAATCAAATTTCAGGAAACATCCCGACAACTATGGGCAATTTGAAAACATTGCAAAATCTATCTTTGGCTCATAACAAACTCCAAGGGTCTATTCCTGAATCATTTAGTGGCATGATAAGTATGGAATCCTTGGATCTCTCCCAAAATTATTTGTCTGGAGTGATTCCAAAGTCCTTAGAGTTACTTGTCCAAATGGAGTACATTAATCTTTCATACAATTTATTGCATGGAGAAATTCCAAATGGTGGGCCTTTTCCTAATTTTACATATGAATCTTTTATGATGAATGAAGATCTTTGTGGGGAGCCCCAGCTCAACGTCCCTACATGCAAAAAAGGAAACAAGCACATCTCAACTAAAATAATGCTTGTCATCAAATGCTTATTGCCTATAGCTTCTGCAATCATTTTGGTTGCCTCATGCCTAATGTTTCTTAAGTTTAAGAAGGGTCATGTTAGTCATGAGATGAGTAATAGAGACTCCTTAAATTTGGATACAGTGGCTAAGATATCCTATTATGATCTTTTGCAAGCAACAAATGGGTTTGATGAGAGTAATTTTCTTGGCAAGGGAAGTTTTGGATTAGTCTACAAAGGAATTCTTTCAGATGGAAAGATAGTTGCTGCAAAAGTATTCAACTCAAACTTGCAAGAAGCATTAAGGAGTTTTGACATTGAATGTGCTGCCATATGCAATTTACGTCATCGAAACCTTATTAAGATCATTAGCAGTTGCTCAAATGGTGATTTTAAATCTCTTGTAATGGAATTCATGCCAAATGGAAGTCTTGAGAGATGGTTGTACTCCCATAACTATTGTTTAGATATAGTGCAAAGATTGGACATAATGATTGATGTGGCATCAGCGTTGGAGTATCTTCATTATGGTTCTCCTATCCCAGTGGTCCATTGTGATGTGAAGCCGAGCAACGTTTTATTGGATGAAGATATGGTGGCCCATTTAAGTGACTTTGGAATTGCCAAATTGCTAATTAACCGTCAATCAGAAATTTATACAGAAACTTTGGCTACAGTTGGTTATATGGCACCAGAGTATGGATCAAAAGGAGCAGTTTCAATGAAAGGAGACGTATACAGCTTTGGTATTTTGCTTATGGAAATGCTTACAAGGAAGAAGCCAACAGATGAGATGTTTACTCAAGATCTGAATCTGAAAGAATTTGTTAGCAAATCAACGCCACATTCAATCATCAATATTGTAGATGTCAATTTGCTGCACACAAGCAACCAAAAAATTGGTAATATATTGCTGCATATATCATCAATTTTTGAGTTAGCCCTAAATTGTTGCGATGATGCACCTGAGGCAAGACCTAATATGTCAGAGGTTGTGGTGTCACTGGGAAAAACCAAGGTCATATTAATGCAAAATATTCAAGGAACCACTAGCTTGTTGGATAAATGTTAA 3849 0.3754 MRKPSCSVFIFLLHCLMISSTWSETDITTDKHALLAFKSFVTLDPYNLLANWSASSSPCKSASSSPCNWLGNLLFLAELDLSNNNFRGQMPKELVQLHGLKFFNLSYNDLHGHVPTWIGALSTLQHLDLCNNSFSGFIRPRSSNLSRLETLHWKYNFTEGTIPPEIGSLGNSKILRLAKNRLSGAVPRPLSNLSSLERLSLSYNILSGVSLIVGGVPKEIGNLPQLQLLYLSNIQLSNSIPSAIFNSSMLQFIELDNNNLSGSLPVKCKELSELNLGNNRFKEGSIPSDIGNLTNLQYLYLSNNSLQGWSILAAVIDLLNMGKLAFLVFILFLHYFMASLAWSQGNSTVDISALLAFKASTSDPYNLLANWSTLLLLHVIGSVLNAIHATGLEILDWNSNFIQGSIPPEIGSLKHLKMLQIAGNKLSETIPPTIFNLSSLQKLNLSHNTLSGEIPSSLFSNSSLRILRLRQNGLNGSIPTLGNQTMLETLVLNNNSFSGEIPQSVYSTPSLRIVDFTYNRLKGNLPEDMCYKLPLLEVFEVAFNHFDGRIPKSISNCTYLRGLFLDQNFFSGLIPKEIGNLDKLEDLILVTNHFSGSIPSHIFNITTLRRVYLQENFFSSFLPSNLGIGLPNLQELMLGQNQFIGQIPISISNASKLTIVDLSWNKFSGDIPTTLGNLTNMIALYSEENDLNGMIPSTINGLQSLQHLSLSNNRLQGSIINELCQIRSLSELYLAGNMFSGMIPKCFTNTSLRRLDLSSNKLISHIPSSLWSLEDMLFLDLSSNALGGRISPEVSNLKAIILFNLSRNQISGNIPTTMGNLKTLQNLSLAHNKLQGSIPESFSGMISMESLDLSQNYLSGVIPKSLELLVQMEYINLSYNLLHGEIPNGGPFPNFTYESFMMNEDLCGEPQLNVPTCKKGNKHISTKIMLVIKCLLPIASAIILVASCLMFLKFKKGHVSHEMSNRDSLNLDTVAKISYYDLLQATNGFDESNFLGKGSFGLVYKGILSDGKIVAAKVFNSNLQEALRSFDIECAAICNLRHRNLIKIISSCSNGDFKSLVMEFMPNGSLERWLYSHNYCLDIVQRLDIMIDVASALEYLHYGSPIPVVHCDVKPSNVLLDEDMVAHLSDFGIAKLLINRQSEIYTETLATVGYMAPEYGSKGAVSMKGDVYSFGILLMEMLTRKKPTDEMFTQDLNLKEFVSKSTPHSIINIVDVNLLHTSNQKIGNILLHISSIFELALNCCDDAPEARPNMSEVVVSLGKTKVILMQNIQGTTSLLDKC 1282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1920g00002 1282 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 681 1261 - -
Pral1920g00002 1282 SMART LRR_typ_2 750 773 IPR003591 -
Pral1920g00002 1282 SMART LRR_typ_2 193 216 IPR003591 -
Pral1920g00002 1282 SMART LRR_typ_2 223 247 IPR003591 -
Pral1920g00002 1282 SMART LRR_typ_2 845 868 IPR003591 -
Pral1920g00002 1282 SMART LRR_typ_2 581 605 IPR003591 -
Pral1920g00002 1282 SMART LRR_typ_2 630 654 IPR003591 -
Pral1920g00002 1282 SMART LRR_typ_2 702 725 IPR003591 -
Pral1920g00002 1282 SMART LRR_typ_2 293 314 IPR003591 -
Pral1920g00002 1282 SMART LRR_typ_2 438 461 IPR003591 -
Pral1920g00002 1282 SMART LRR_typ_2 726 749 IPR003591 -
Pral1920g00002 1282 SMART LRR_typ_2 73 97 IPR003591 -
Pral1920g00002 1282 SMART LRR_typ_2 821 844 IPR003591 -
Pral1920g00002 1282 SMART LRR_typ_2 413 437 IPR003591 -
Pral1920g00002 1282 SMART LRR_typ_2 121 145 IPR003591 -
Pral1920g00002 1282 Pfam Leucine rich repeat N-terminal domain 29 71 IPR013210 -
Pral1920g00002 1282 Pfam Leucine rich repeat N-terminal domain 350 372 IPR013210 -
Pral1920g00002 1282 Gene3D Ribonuclease Inhibitor 604 925 IPR032675 -
Pral1920g00002 1282 Gene3D Ribonuclease Inhibitor 266 330 IPR032675 -
Pral1920g00002 1282 Pfam Leucine rich repeat 823 882 IPR001611 GO:0005515
Pral1920g00002 1282 Pfam Leucine rich repeat 727 786 IPR001611 GO:0005515
Pral1920g00002 1282 Pfam Leucine rich repeat 415 474 IPR001611 GO:0005515
Pral1920g00002 1282 Gene3D Ribonuclease Inhibitor 460 530 IPR032675 -
Pral1920g00002 1282 Gene3D Ribonuclease Inhibitor 349 459 IPR032675 -
Pral1920g00002 1282 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 117 210 - -
Pral1920g00002 1282 ProSiteProfiles Protein kinase domain profile. 989 1267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1920g00002 1282 Gene3D Phosphorylase Kinase; domain 1 952 1064 - -
Pral1920g00002 1282 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 1065 1273 - -
Pral1920g00002 1282 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 528 622 - -
Pral1920g00002 1282 ProSitePatterns Protein kinases ATP-binding region signature. 995 1017 IPR017441 GO:0005524
Pral1920g00002 1282 FunFam Serine-threonine protein kinase plant-type 969 1064 - -
Pral1920g00002 1282 SUPERFAMILY L domain-like 61 311 - -
Pral1920g00002 1282 SMART serkin_6 989 1268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1920g00002 1282 ProSiteProfiles Leucine-rich repeat profile. 439 461 IPR001611 GO:0005515
Pral1920g00002 1282 FunFam Leucine-rich repeat receptor protein kinase EMS1 385 480 - -
Pral1920g00002 1282 Gene3D Ribonuclease Inhibitor 531 603 IPR032675 -
Pral1920g00002 1282 Pfam Protein kinase domain 991 1258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1920g00002 1282 Gene3D Transferase(Phosphotransferase) domain 1 1065 1275 - -
Pral1920g00002 1282 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 628 921 - -
Pral1920g00002 1282 SUPERFAMILY L domain-like 349 624 - -
Pral1920g00002 1282 ProSiteProfiles Leucine-rich repeat profile. 751 773 IPR001611 GO:0005515
Pral1920g00002 1282 SUPERFAMILY RNI-like 546 888 - -
Pral1920g00002 1282 SMART LRR_sd22_2 702 725 - -
Pral1920g00002 1282 SMART LRR_sd22_2 821 844 - -
Pral1920g00002 1282 SMART LRR_sd22_2 413 439 - -
Pral1920g00002 1282 SMART LRR_sd22_2 193 211 - -
Pral1920g00002 1282 SMART LRR_sd22_2 293 314 - -
Pral1920g00002 1282 SMART LRR_sd22_2 749 765 - -
Pral1920g00002 1282 Gene3D Ribonuclease Inhibitor 161 265 IPR032675 -
Pral1920g00002 1282 Gene3D Ribonuclease Inhibitor 28 160 IPR032675 -
Pral1920g00002 1282 SUPERFAMILY Protein kinase-like (PK-like) 972 1261 IPR011009 -
Pral1920g00002 1282 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1108 1120 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1920g00002 Pral-Chr1920 9272 44575 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1920g00002 656 895 Receptor kinase-like Gene Family AT3G47570 30.165 3.81e-20 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Pral1920g00002 Pkinase 9.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1920g00002 - K13420 pcin:129285519 1061.98