Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1918g00008 ATGGCGGAGAAAGACGATGGGTTGGGCTTGGGTTTGAGTCTGAGCTTGGGACTGGGAATGAATCCGTCTCAGAGTCTCATGCAGAAGCCTTCTCGGACTCTTCCGAATCAAAGAGCTTCCTGGAACGATATTTTCCAGCTTCCTGATCGGAGCTGCGAGGCGAGAACGTTGCTCCGGGGAGTGGATGTAAATTTGGCGCCGCCGTCAACGGTTGTGGACTGTGACGATGAAAATGGCGTCTCCTCACCGAACAGTACTGTGTCGAGCATCAGCGGAAAGCGGAGCGAGAGAGAGTCTATTGGCGGAGAGCATGAAGCCGAGCGTGCCTCATGTTCTCGAGGAAGCGACGATGATGAAGGCGGCGGCGACGGAGGCGGCAGAGACGGAGACGGAGACGGCGACGGCGACGGAGATACTTCCAGAAAAAAGCTCCGGCTGTCGAAGGAACAATCGATTGTGCTGGAGGAAACGTTCAAGGAGCACAATACCCTCAATCCGAAGCAAAAACAGGAATTGGCAAAACGGCTGAATCTGAGGCCAAGACAAGTGGAAGTGTGGTTTCAGAACAGGAGGGCAAGGACCAAGTTGAAGCAAACTGAAGTGGATTGTGAGTACTTGAGGAGATGTTGTGAGACTTTGACTGAAGAGAATAGGAGGTTGCAAAAGGAAGTGCAAGAACTGAGGGCATTAAAGCTATCCCCACAGTTCTACATGCACATGAACCCTCCAACCACTCTTACAATGTGCCCTTCTTGTGAGCGCGTCGCGGTCTCATCCACATCCTCCTCCTCATCAGCAGCGGCAGCCGTGTCGTCCAACTCAGCCCCATTGAGCTCTACCATTCAAAGGCCGGTGCCCCTCCTCCCCTGGGCGGCTAACTCGAATCGAAACCGCCCGGGTGACAGCTTAAATCCCCGGCCATGA 924 0.5411 MAEKDDGLGLGLSLSLGLGMNPSQSLMQKPSRTLPNQRASWNDIFQLPDRSCEARTLLRGVDVNLAPPSTVVDCDDENGVSSPNSTVSSISGKRSERESIGGEHEAERASCSRGSDDDEGGGDGGGRDGDGDGDGDGDTSRKKLRLSKEQSIVLEETFKEHNTLNPKQKQELAKRLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCETLTEENRRLQKEVQELRALKLSPQFYMHMNPPTTLTMCPSCERVAVSSTSSSSSAAAAVSSNSAPLSSTIQRPVPLLPWAANSNRNRPGDSLNPRP 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1918g00008 307 ProSiteProfiles 'Homeobox' domain profile. 137 197 IPR001356 GO:0003677
Pral1918g00008 307 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 13 274 - -
Pral1918g00008 307 MobiDBLite consensus disorder prediction 66 147 - -
Pral1918g00008 307 MobiDBLite consensus disorder prediction 75 95 - -
Pral1918g00008 307 FunFam Homeobox-leucine zipper protein 18 128 202 - -
Pral1918g00008 307 Coils Coil 203 233 - -
Pral1918g00008 307 ProSitePatterns 'Homeobox' domain signature. 172 195 IPR017970 GO:0000981|GO:0006355
Pral1918g00008 307 Pfam Homeodomain 141 195 IPR001356 GO:0003677
Pral1918g00008 307 CDD homeodomain 141 198 IPR001356 GO:0003677
Pral1918g00008 307 MobiDBLite consensus disorder prediction 17 35 - -
Pral1918g00008 307 SUPERFAMILY Homeodomain-like 128 198 IPR009057 -
Pral1918g00008 307 Gene3D - 145 195 - -
Pral1918g00008 307 SMART HOX_1 139 201 IPR001356 GO:0003677
Pral1918g00008 307 MobiDBLite consensus disorder prediction 285 307 - -
Pral1918g00008 307 Pfam HD-ZIP protein N terminus 1 98 IPR006712 GO:0005634
Pral1918g00008 307 Pfam Homeobox associated leucine zipper 197 231 IPR003106 GO:0006355|GO:0043565
Pral1918g00008 307 SMART halz 197 240 IPR003106 GO:0006355|GO:0043565
Pral1918g00008 307 MobiDBLite consensus disorder prediction 1 35 - -
Pral1918g00008 307 MobiDBLite consensus disorder prediction 96 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1918g00008 Pral-Chr1918 59551 62144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1918g00008 27 300 Homeobox Transcription Factor Family AT3G60390 60.976 6.13e-104 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral1918g00008 HD-ZIP_N 1.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1918g00008 K09338 - qsa:O6P43_026962 349.362