Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1916g00005 GTTCTTGAATATCGTGGGGAACAAGTGAGACGCAGCATTGCTGATCTAAGGGAGGCGCATTATAAGAGAGAAGGCAAAGATTGCTATCTTTTCAAGATAAGTGAAGAAGTGGTGGTAGATGCTACTGATAAAGGAAATATTGCCCGGCTTATCAACCATTCTTGCATGCCGAATTGCTATGCAAGAATTATGAGCGTCGGTGATGATGAGAGCCGTATCGTACTCATCGCAAAGACCAATGTTCCCGCTGGTGATGAACTAACGTATGACTACTTGTTTGATCCTGATGAGCCAGATGAAAACAAAGTGCCATGTTTATGTAAAGCTCCAAATTGCAGGAAATTCATGAACTAG 354 0.4237 VLEYRGEQVRRSIADLREAHYKREGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIVLIAKTNVPAGDELTYDYLFDPDEPDENKVPCLCKAPNCRKFMN 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1916g00005 117 ProSiteProfiles SET domain profile. 1 92 IPR001214 GO:0005515
Pral1916g00005 117 Gene3D SET domain 1 117 IPR046341 -
Pral1916g00005 117 FunFam Histone-lysine N-methyltransferase 1 117 - -
Pral1916g00005 117 Pfam SET domain 31 91 IPR001214 GO:0005515
Pral1916g00005 117 SMART set_7 1 98 IPR001214 GO:0005515
Pral1916g00005 117 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 1 117 IPR044570 GO:0042800|GO:0051568
Pral1916g00005 117 SUPERFAMILY SET domain 1 114 IPR046341 -
Pral1916g00005 117 SMART PostSET_3 101 117 IPR003616 -
Pral1916g00005 117 ProSiteProfiles Post-SET domain profile. 101 117 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1916g00005 Pral-Chr1916 35239 36097 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1916g00005 1 117 C2H2 Transcription Factor Family AT2G23740 35.821 8.74e-15 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pral1916g00005 SET 1.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1916g00005 - - gmx:100811337 233.417