Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1916g00002 ATGTCATCGACTCTGCTGGAGGTGACTCGTGCGGCACACGAGGAGGTGGAGCGGCTTGAGCGTCTGATAGTGAAGGACCTTCAAAATGAGCCCGCGTCGAACAAGGACCGCTTGTTTCAGAGTCACCGCGTGCGAAATATGATCGATACTATCACTTCTACCACTGAAAAGCTCATTGATATATACGAAGATAAAGACAATGCAAGGAAAGATGAAATTGCTGCACTGGGGGGTCAAACTGCAACTGGAACAAATGTGTTTAGTGCGTTTTATGATAGACTGAAAGAGATACGAGAGTATCATAGAAAGCACCCGGCTGCACGTGTTGTTGATGCTAATGATGACTATGAAGAACTTCTCAAAGAGGAGCCTCAAATTGAGTTTAGTGGAGAGGAAGCTGTTGGGCGGTACTTAGACTTGCATGAATTGTACTATCAGTATGTTAATTCCAAATTTGGTGAGCCAATTGAGTACTCTGCTTACCTTGATGTTTTTTCACAAACAGAGAAGATCCCACGCAAAATGAAAATGACTAGGCAGTACAGGGAATATATGGAGAATCTTTTGGAGTATCTCATATATTTCTTCCAGCGGACAGAACCCTTGCAAGATCTGGATCGAATTTTCTCTAAGGTAACAGCTGAGTTTGAAGAAAATTGGGCTGCAAACAAGTTACCTGGATGGGAGAATGACATTCAAGAGAATGGACACGTACCTGCTCAACACACTGCAATTGATCTTGATTACTACAGTACAGTTGAAGAGCTGACAGAATTGGGTCCTGAAAAGTTGAAAGAGGCATTGGCTGCATTGGGACTTAAGACTGGGGGTACTGTTCAGCAACGGGCAGAGAGGCTGTTCCTTACAAAGCATACACCTCTTGAAAAGTTGGACCGGAAGCATTTTGCCAAGGGACCACGAGTCAGAAAAAATGGCACTGCCGCAGTTCCACAAGAAGATGAAAATTCAAAGGAAATTGCACTGCTGGAGGCCAAGCTGTCCAAGTTATGCGATCTGTTAGAAGAGACAATTGCACGAACAAAAGACAATGTTGTGAAGAAGCAAGCCTTGACATATGAAGAAATTGAAGCAGAACGTGAGGAGGAAGAAACACAGGAGGAATCTGAAAGTGAAGATGAGGAACAGCAGATATATAATCCCCTAAAATTGCCAATGGGATGGGATGGGAAGCCTATACCTTATTGGCTTTATAAGCTACATGGTCTTGGCCAGGAATTCAAGTGTGAGATATGTGGGAACTACAGTTATTGGGGGCGTAGAGCTTTTGAACGGCATTTCAAAGAATGGCGCCATCAGCATGGGATGCGCTGCCTTGGTATACCAAATACCAAGAACTTTAATGAAATAACGTCAATTGAGGAGGCAAAGGAACTCTGGAAAAGAATACAAGAAAGGCAGGGAGTGAACAAGTGGCGCCCAGATCTCGAAGAAGAATATGAAGATAAGGAAGGCAACATCTACAACAAGAAGACATATACTGATTTACAGCGCCAGGGACTTATATAA 1527 0.4348 MSSTLLEVTRAAHEEVERLERLIVKDLQNEPASNKDRLFQSHRVRNMIDTITSTTEKLIDIYEDKDNARKDEIAALGGQTATGTNVFSAFYDRLKEIREYHRKHPAARVVDANDDYEELLKEEPQIEFSGEEAVGRYLDLHELYYQYVNSKFGEPIEYSAYLDVFSQTEKIPRKMKMTRQYREYMENLLEYLIYFFQRTEPLQDLDRIFSKVTAEFEENWAANKLPGWENDIQENGHVPAQHTAIDLDYYSTVEELTELGPEKLKEALAALGLKTGGTVQQRAERLFLTKHTPLEKLDRKHFAKGPRGXRKNGTAAVPQEDENSKEIALLEAKLSKLCDLLEETIARTKDNVVKKQALTYEEIEAEREEEETQEESESEDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKRIQERQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1916g00002 509 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 127 176 IPR031774 -
Pral1916g00002 509 MobiDBLite consensus disorder prediction 363 382 - -
Pral1916g00002 509 MobiDBLite consensus disorder prediction 363 384 - -
Pral1916g00002 509 Pfam SF3a60/Prp9 C-terminal 390 509 IPR024598 GO:0000398|GO:0003723|GO:0005681
Pral1916g00002 509 Pfam Splicing factor SF3a60 binding domain 80 105 IPR021966 -
Pral1916g00002 509 ProSiteProfiles Zinc finger matrin-type profile. 414 445 IPR000690 GO:0003676|GO:0005634|GO:0008270
Pral1916g00002 509 PANTHER SPLICING FACTOR SF3A-RELATED 244 312 - -
Pral1916g00002 509 Pfam Replication stress response SDE2 C-terminal 224 304 IPR025086 -
Pral1916g00002 509 Coils Coil 353 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1916g00002 Pral-Chr1916 17420 24553 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1916g00002 1 509 C2H2 Transcription Factor Family AT5G06160 77.210 0.0 786
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1916g00002 K12827 - gmx:100815393 897.501