Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1913g00004 ATGACAACGGCAATTGCAATTGAAGATGTTAGAAGGGAGGTGATATTACGAGCCTTAACTGGACACAATAATCTGGTGCAATTCTATGATGCATTTGAAGACCAAGATAATGTCTACATTGTAATGGAGTTATGTGAAGGAGGCGAGCTGTTAGATAGAATACTTTCAAGAGGTGGGAAATACTCAGAAGATGACGCAAAAGCTGTCTTGATACAAATATTGAATGTTGTTGCGTTCTGTCATCTTCAGGGTGTGGTGCACAGAGATCTTAAGCCAGAGAATTTTTTGTATGTGTCAAAGGATGAGAATGCTGAATTAAAAGCTATTGACTTTGGATTATCAGACTTTGTCAAACCAGATGAAAGGCTCAATGATATTGTGGGTAGTGCATACTATGTGGCTCCTGAAGTTCTACATAGATCTTACAGTACAGAAGCTGATGTGTGGAGTATCGGCGTGATAGCTTATATTCTCTTATGTGGTAGTCGTCCATTTTGGGCACGAACAGAGTCTGGTATATTTAGGGCTGTTCTGAAAGCTGATCCAAGCTTTGATGAACCTCCTTGGCCGTCCTTATCTTCAGAAGCAAGAGATTTTGTTAAGCGCCTGTTGAATAAGGACCCAAGGAAGCGAATATCAGCTGCCCAGGCTCTAAGTCATCCTTGGATTAGGAATTTCAACAATGTAAAAGTTCCTCTTGATATTTTAATATTTAAGCTCATGAAGGCCTATATGCGATCATCATCCTTGCGCAAGGCTTCTTTAAGGGCGTTGTCAAAGACATTGACTGCTGATGAGCTCTATTATTTGAAGGAGCAATTTGCTCTGCTGGAGCCCAGCAAAAATGGCAGCATAACATTAGAAAACATCAGCATGGCGCTGAGGAAACACGCAACAGATGCCATGAAAGAGTCCCACATTTCTGACTTTATGGCCTCGCTAAACTCATTACAATATAGAAGAATGGGTTTTGAAGAATTTTGTGCGGCTGCATTAAGTGTGTATCAGCTTGAAGCCCTTGATCGCTGGGAACAACATGCACGCTGTGCATATGAAATTTTTGAGAAAGATGGAAACAGAGCTATTGTCATTGAAGAACTTGCTTCAGAACTTGGACTTGGCCCTTCTATCCCTGTTCATGTTGTACTTGTCGATTGGATAAGGCACACTGATGGGAAGCTAAGCTTTCTTGGGTTTGTCAAATTGTTACATGGTGTATCTGGCAGAACTCTTTCAAAGGTGCAATAG 1248 0.4111 MTTAIAIEDVRREVKXLRALTGHNNLVQFYDAFEDQDNVYIVMELCEGGELLDRILSRGGKYSEDDAKAVLIQILNVVAFCHLQGVVHRDLKPENFLYVSKDENAELKAIDFGLSDFVKPDERLNDIVGSAYYVAPEVLHRSYSTEADVWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDEPPWPSLSSEARDFVKRLLNKDPRKRISAAQALSHPWIRNFNNVKVPLDILIFKLMKAYMRSSSLRKASLRALSKTLTADELYYLKEQFALLEPSKNGSITLENISMALRKHATDAMKESHISDFMASLNSLQYRRMGFEEFCAAALSVYQLEALDRWEQHARCAYEIFEKDGNRAIVIEELASELGLGPSIPVHVVLVDWIRHTDGKLSFLGFVKLLHGVSGRTLSKVQ 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1913g00004 416 SMART serkin_6 3 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1913g00004 416 Gene3D - 242 403 - -
Pral1913g00004 416 Gene3D Phosphorylase Kinase; domain 1 3 50 - -
Pral1913g00004 416 ProSiteProfiles Protein kinase domain profile. 1 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1913g00004 416 SUPERFAMILY Protein kinase-like (PK-like) 6 249 IPR011009 -
Pral1913g00004 416 SUPERFAMILY EF-hand 256 405 IPR011992 -
Pral1913g00004 416 Pfam Protein kinase domain 8 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1913g00004 416 CDD STKc_CAMK 6 223 - -
Pral1913g00004 416 Gene3D Transferase(Phosphotransferase) domain 1 51 235 - -
Pral1913g00004 416 FunFam CDPK-related kinase 1 2 50 - -
Pral1913g00004 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 86 98 IPR008271 GO:0004672|GO:0006468
Pral1913g00004 416 PANTHER SERINE/THREONINE-PROTEIN KINASE 3 384 - -
Pral1913g00004 416 Gene3D - 264 333 - -
Pral1913g00004 416 FunFam CDPK-related kinase 1 260 333 - -
Pral1913g00004 416 FunFam CDPK-related kinase 1 52 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1913g00004 Pral-Chr1913 27333 30679 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1913g00004 1 412 EF-hand Containing Proteins AT3G50530 77.878 0.0 725
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Pral1913g00004 Pkinase 3.8e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1913g00004 K13412 - gmx:100798913 758.059