Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1910g00004 ATGTCCTCCGCCGCCTCGGCCTCCTCCTTCCTCTCCAACATCGGCCTCGGCTACTCCATCGCCATCGCCCTTGCCTTCCTCTTTCTCCTCTCCACCCTCCTCCTCTCTTCCTACCTCTGCTGCCGGCCTCACCCTCCCTCCCCTCCTCCTCCCCCTCCCCCCGACGGAATCATTCTCCCCCGCATCATCTTCGTCGCCGACGAAGACCACAACCGTGATGATAACTCCGTCTCCCTCGGTCTCGCTCCTAATGTTATCAACTCCTACCCGAGGTTCTCATACACCAAGGACGCTCTCGCCGCCGCCGACGCCGCGGATAACAATATCACGTGCTCCATCTGCTTGTGCGAGTACAAGGACTCCGAGATGCTGAGGATGATGCCGGAGTGCCGCCATTTCTTCCACCTCGTCTGCCTCGATGCATGGCTCAAGCTCAACGGCTCCTGCCCCGTCTGCAGAAACTCTCCGCTTCCTACGCCCTTGCTCACGCCCTCGCATTGA 501 0.6068 MSSAASASSFLSNIGLGYSIAIALAFLFLLSTLLLSSYLCCRPHPPSPPPPPPPDGIILPRIIFVADEDHNRDDNSVSLGLAPNVINSYPRFSYTKDALAAADAADNNITCSICLCEYKDSEMLRMMPECRHFFHLVCLDAWLKLNGSCPVCRNSPLPTPLLTPSH 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1910g00004 166 SMART ring_2 111 152 IPR001841 -
Pral1910g00004 166 Pfam Ring finger domain 110 153 IPR001841 -
Pral1910g00004 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 157 IPR013083 -
Pral1910g00004 166 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Pral1910g00004 166 SUPERFAMILY RING/U-box 105 157 - -
Pral1910g00004 166 PANTHER RING-H2 FINGER PROTEIN ATL67 4 164 IPR044289 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1910g00004 Pral-Chr1910 7488 11209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1910g00004 15 164 C3H Transcription Factor Family AT5G06490 36.646 5.83e-31 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1910g00004 - - pvy:116141324 186.037