Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1897g00004 ATGGATTGGGATTGGAGCATAAGACCTTCTGTTCCTCAAGCGGAGTCCTCCTTTGGCTTCCTCTGTAACTTTAACTACACACCATATCCAGGAATGGAAGTGAGACATCCAGCAATGAGAGAGAGTGAGAGACAAGGGTTGGCTCCGGGAATGGACAGAGTCAACTACGGAAAGCAAGAACAGAAGAAGAAGAAGCGATTAACGAGCAAGCAGCTTGAGTCATTGGAGAAGAGTTTCGAGAAGGAGAGGAAATTGGACGCAGATAGGAAGATGAAGCTTTCGAAGGAGTTAGGGCTTCAGCCTCGCCAGGTTGCGGTTTGGTTCCAAAACAGGAGGGCTAGGTGGAAGGCAAAGCAGCTTGAGCACTTGTATGATGCTCTCAAACAGGATTTTGATGCCATCTACAAGGAAAGACAGAAGCTTCAAGAAGAGGTTATGATATTAAAAGCCATGCTGAAAAAGCAAGAATCTTCTAGGACGCAGGCATCTGCAGATTATCTAGAAATCTGCGGAAGAAAGTAA 522 0.4579 MDWDWSIRPSVPQAESSFGFLCNFNYTPYPGMEVRHPAMRESERQGLAPGMDRVNYGKQEQKKKKRLTSKQLESLEKSFEKERKLDADRKMKLSKELGLQPRQVAVWFQNRRARWKAKQLEHLYDALKQDFDAIYKERQKLQEEVMILKAMLKKQESSRTQASADYLEICGRK 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1897g00004 173 CDD homeodomain 62 119 IPR001356 GO:0003677
Pral1897g00004 173 ProSiteProfiles 'Homeobox' domain profile. 58 118 IPR001356 GO:0003677
Pral1897g00004 173 Coils Coil 110 158 - -
Pral1897g00004 173 SMART HOX_1 61 122 IPR001356 GO:0003677
Pral1897g00004 173 MobiDBLite consensus disorder prediction 40 75 - -
Pral1897g00004 173 ProSitePatterns 'Homeobox' domain signature. 93 116 IPR017970 GO:0000981|GO:0006355
Pral1897g00004 173 SUPERFAMILY Homeodomain-like 51 120 IPR009057 -
Pral1897g00004 173 PRINTS Lambda-repressor HTH signature 98 114 IPR000047 GO:0003677
Pral1897g00004 173 PRINTS Lambda-repressor HTH signature 89 98 IPR000047 GO:0003677
Pral1897g00004 173 Gene3D - 55 124 - -
Pral1897g00004 173 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 56 158 IPR045224 GO:0003700
Pral1897g00004 173 Pfam Homeodomain 62 116 IPR001356 GO:0003677
Pral1897g00004 173 MobiDBLite consensus disorder prediction 56 75 - -
Pral1897g00004 173 Coils Coil 58 78 - -
Pral1897g00004 173 Pfam Homeobox associated leucine zipper 118 152 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1897g00004 Pral-Chr1897 36082 37123 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1897g00004 9 148 Homeobox Transcription Factor Family AT5G03790 52.740 3.25e-44 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral1897g00004 Homeodomain 1.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1897g00004 - - pcin:129303220 261.151