Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1896g00001 ATGGATCAGCCCCCATCCTCTGCTGTTAGACGCAGCTTGAAGCGCAAGCTCGAACGAGAATTCGCCGAAGAAGGAGCAGATCAACCAACGGCCGATCGTAAAGTGTTGGTTCTTGAACCTCAAAATTTTTTGAGTGAAGTTGTGTCGCAAGTCACTATTCTCAACTCCAGTTTCTCATCGTCTCAGTCGGATCGCCTCGCAGCCAAGCGCGCTGTTCATGTTCTCACCGAATTAGCAAAGAATGAGGAAATTGTGAATAGTATAGTGGATTGTGGAGCCGTTCCTGCTTTGTTGAGGCATCTGAAAGCACCAGAACCAGTTAGAGAAGGTGATGGTGTTCCCAAGCCTTACGAGCATGAGGTGGAAAAGGGATGTGCCTTCGTCCTCGGACTTCTTGCTGTTAAACCAGAGCTTCAACAACTCATTGTCGATGCTGGAGCTTTACCCTATCTTTTGGACATGTTAAAGAGGCACAAGACCTGTGGTAATTCACGGGCACTTACTGGCCTTATAAGGAGAGCAGCTGATGCCATCACAAACCTTGCGCACGAAAATAGCAGCATTAAAACTAGTGTGAGGATGGAAGGTGGGATCCCTCCTCTCGTTGAATTGCTTGAATTTGATGACGCAAAGGTAAAAAGGGCAGCTGCAGGGGCCTTACGCACCCTTGCATTTAAAAATGACGAGAACAAAAACCAGATTGTTGGATGCAATGCGCTGCCTACTCTTATACTAATGCTTAGATCAGAGGATGCTGCAATACATTCCGAAGCAGTTGGCGTGATTGGAAATCTGGTCCATTCTTCTCCAAACATAAAGAGGGAAGTTCTTCTAGCTGGTGCTCTACAACCTGTAATTGGATTGCTTAGATCTTGCTGTTCTGAGAGTCAAAGAGAAGCAGCTCTTTTGATTGGTCAATTCGCTGCAACAGATTCTGATTGCAAGGTTCATATTGCTCAAAGAGGGGCTATCCAGCCACTGATCGACATGCTTAAGTCTCCAGATGCACAGCTTCGGGAAATGTCGGCTTTTGCTCTGGGGAGATTGGCTCAGGACATACACAATCAAGCCGGTATTGCTTATAATGGTGGTATAGAGCTTCTACTCAATCTTCTTTGCTCCAAGAATGGGCCTCTCCAACATAATGCAGCCTTTGCTCTATATGGTCTTGCTGATAATGAGGACAATGTTGCGGATATTGTTAAGGTTGGTGGTGTTCAAAAACTACAGGATGGAGATTTCAAAGTTCAACCTACTAAAGAGTGTGTAGGAAAGACAATGAAAAGATTAGAGGAGAAAATGCATGGACAAGTACTGAAACAGCTATTGTATCTTATGCGTTTCGGAGAAAAGGTTGTTCAAAGACGTGTGGCTCTAGCTCTTGCTCATTTATGTTCCCCTGATGATCGTAAATCCATTTTTGTTGACAACAATGGACTTGAGTTCCTGCTGGATCTTCTAGAATCTACAAACCTCAAACAGAAACGTGATGCGTCAATGGCACTTCACTCGTTGGCCGTCAGAACCACATCTGTCTCTCCCTTTGATGTTGCCCCTCTGTCCCCGATTCCCCAGGTAAACTACATATCTCATTTGCTTACCCCATTTCATCAA 1614 0.4504 MDQPPSSAVRRSLKRKLEREFAEEGADQPTADRKVLVLEPQNFLSEVVSQVTILNSSFSSSQSDRLAAKRAVHVLTELAKNEEIVNSIVDCGAVPALLRHLKAPEPVREGDGVPKPYEHEVEKGCAFVLGLLAVKPELQQLIVDAGALPYLLDMLKRHKTCGNSRALTGLIRRAADAITNLAHENSSIKTSVRMEGGIPPLVELLEFDDAKVKRAAAGALRTLAFKNDENKNQIVGCNALPTLILMLRSEDAAIHSEAVGVIGNLVHSSPNIKREVLLAGALQPVIGLLRSCCSESQREAALLIGQFAATDSDCKVHIAQRGAIQPLIDMLKSPDAQLREMSAFALGRLAQDIHNQAGIAYNGGIELLLNLLCSKNGPLQHNAAFALYGLADNEDNVADIVKVGGVQKLQDGDFKVQPTKECVGKTMKRLEEKMHGQVLKQLLYLMRFGEKVVQRRVALALAHLCSPDDRKSIFVDNNGLEFLLDLLESTNLKQKRDASMALHSLAVRTTSVSPFDVAPLSPIPQVNYISHLLTPFHQ 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1896g00001 538 SMART arm_5 467 507 IPR000225 GO:0005515
Pral1896g00001 538 SMART arm_5 269 309 IPR000225 GO:0005515
Pral1896g00001 538 SMART arm_5 185 225 IPR000225 GO:0005515
Pral1896g00001 538 SMART arm_5 352 392 IPR000225 GO:0005515
Pral1896g00001 538 SMART arm_5 135 183 IPR000225 GO:0005515
Pral1896g00001 538 SMART arm_5 81 134 IPR000225 GO:0005515
Pral1896g00001 538 SMART arm_5 227 267 IPR000225 GO:0005515
Pral1896g00001 538 SMART arm_5 311 351 IPR000225 GO:0005515
Pral1896g00001 538 Pfam Armadillo/beta-catenin-like repeat 311 350 IPR000225 GO:0005515
Pral1896g00001 538 Pfam Armadillo/beta-catenin-like repeat 227 266 IPR000225 GO:0005515
Pral1896g00001 538 Pfam Armadillo/beta-catenin-like repeat 192 224 IPR000225 GO:0005515
Pral1896g00001 538 Gene3D - 354 411 IPR011989 -
Pral1896g00001 538 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 363 405 IPR000225 GO:0005515
Pral1896g00001 538 SUPERFAMILY ARM repeat 361 507 IPR016024 -
Pral1896g00001 538 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 196 231 IPR000225 GO:0005515
Pral1896g00001 538 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 146 196 IPR000225 GO:0005515
Pral1896g00001 538 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 238 280 IPR000225 GO:0005515
Pral1896g00001 538 SUPERFAMILY ARM repeat 62 410 IPR016024 -
Pral1896g00001 538 Gene3D - 42 353 IPR011989 -
Pral1896g00001 538 Gene3D - 419 513 IPR011989 -
Pral1896g00001 538 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 5 526 IPR044282 -
Pral1896g00001 538 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 322 364 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1896g00001 Pral-Chr1896 267 3861 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1896g00001 185 406 U-box Gene Family AT5G67340 27.354 7.92e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1896g00001 - - sind:105165291 764.222