Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1890g00003 ATGAAAAAAGAGGAAGATCAAGGACAGTGTTCATCATCTTCTCAAGCCATCAATAACATTCAGAGCTATCAAGAACAGCTTCTTCTTCACCAAATGATGAGGCAGCACCAGCAGCAGCCAAGCGTCGACGTTTTCGGAGGTAATTCTTCTAATAACAACAATAACAATACCAACAACGAAAGAGGATTGATGTTCCCTGAGGTTTCTCCAATCTTTCATCCGCCGCCGCCGCCACAGCCGCCATGGTCTCTCCCTCCTGTTCACTCGTTCAACCCGGTCCGAGACAGCGACCAGCAGTTTTTGGTCCCTCCGCCTTCCTCTTCGCTCTACGCGGGCCTCTTCAACCGGAGGGCTCCTTCTCTGCAGTTCGCTTACGATGGTCCGTCCAATTCCGATCACCACCATCTCCGGATCATCTCCGACACCCTCGGGGTCGGACCCGTAGTGGGTCAACCGGGCTCAGCTCCCTTCGGCCTCCAAGCCGAGCTGGGCAAGATGACGGCTCAAGAAATCATGGACGCCAAGGCCCTCGCTGCTTCAAAGAGCCACAGCGAAGCCGAAAGAAGACGCCGAGAGAGAATCAACAACCATCTAGCCAAGCTTCGAAGCTTATTGCCCAATACAACCAAAACAGACAAAGCTTCATTATTAGCAGAAGTAATCCAGCATGTGAAGGAGCTGAAGCGTCAAACTTCAATAATAGCAGAAACAAGCCCAGTGCCGACAGAAACCGACGAGTTGACGGTGGACGACGCTTCCGATGAGGAGGGCAGGTTCGTGATCAAAGCCTCGCTTTGCTGCGAAGACAGGTCCGATCTCCTGCCGGACCTCATCAAGACGTTGAAGGCCCTAAGGTTGAGAACCGTGAAGGCAGAGATCACCACGCTCGGCGGACGCGTTAAGAACGTCTTGTTCGTCACCGGCGAAGAAGATGATCAGTTCAGTGGCGGCGGCGAGGAGCAGGGACAGCATCAGCATTGTATAAGCTCCATCCAAGAGGCTTTGAAGGCAGTGATGGAGAAGAATGGTGGTGGTGATGAGAATGGGAATGTTAAGAGGCAAAGAACTAATAATAATATCAATATCCTCGAACAAAACAGGTCTTTATGA 1110 0.5153 MKKEEDQGQCSSSSQAINNIQSYQEQLLLHQMMRQHQQQPSVDVFGGNSSNNNNNNTNNERGLMFPEVSPIFHPPPPPQPPWSLPPVHSFNPVRDSDQQFLVPPPSSSLYAGLFNRRAPSLQFAYDGPSNSDHHHLRIISDTLGVGPVVGQPGSAPFGLQAELGKMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSIIAETSPVPTETDELTVDDASDEEGRFVIKASLCCEDRSDLLPDLIKTLKALRLRTVKAEITTLGGRVKNVLFVTGEEDDQFSGGGEEQGQHQHCISSIQEALKAVMEKNGGGDENGNVKRQRTNNNINILEQNRSL 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1890g00003 369 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 182 234 IPR036638 GO:0046983
Pral1890g00003 369 MobiDBLite consensus disorder prediction 341 360 - -
Pral1890g00003 369 Gene3D - 173 234 IPR036638 GO:0046983
Pral1890g00003 369 Pfam Helix-loop-helix DNA-binding domain 181 227 IPR011598 GO:0046983
Pral1890g00003 369 SMART finulus 184 233 IPR011598 GO:0046983
Pral1890g00003 369 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 178 227 IPR011598 GO:0046983
Pral1890g00003 369 PANTHER TRANSCRIPTION FACTOR BHLH30 43 362 IPR045847 GO:0003700|GO:0006355
Pral1890g00003 369 CDD bHLH_AtAIG1_like 173 250 - -
Pral1890g00003 369 FunFam transcription factor bHLH30 173 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1890g00003 Pral-Chr1890 45970 48737 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1890g00003 2 367 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 58.398 3.04e-114 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral1890g00003 HLH 2.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1890g00003 - - pcin:129322869 572.778