Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1885g00003 ATGGGTTTGTGTAGATTTTCCTTGTTTGCATTTTTCTCTGTGGTCGTTGTTCATTTAGGAGCTCATGGGGAAGAAAATGCCGAGCTGGTGAATGATAAAAGTTCTCTGATATCATTCATGAGAGGCATTGTTTCTGACCCAAAGAATGCTCTAGCGAGTTGGAAATCTCCTGATATTCATGTTTGTAATTGGGCCGGCATAAGATGCAACAATGCAAGTGACAGAGTCATTGAGATTGATCTCAATGGAAAATCACTAGGAGGTACAATTTCCCCTGCTATTTCCAACCTCTCTTCCTTGAAAATTCTTGATCTTTCTGAGAATTCCTTTGTGGGTCACATTCCAAAAGAGTTAGGCTTCTTAACTCAACTAGGGCAACTCAGTTTATCTTGGAATTTTCTTGAAGGAGAAATTCCAGCTGAGTTGGGTTCACTTCGTAACTTATACTACCTTGACATGGGAAGCAACCAGCTTGAGGGTGAGATTCCACAATCACTTTTCTGTAATGGGTCTTCCTCATTGAGGTATATAGACCTCTCCAACAATTCCCTAGGGGGACAAATCCCATTGAATAATGAGTGTATGCTTCTAGAGGTTAGGTTCCTCCTGCTCTGGTCTAATAAGCTAGTAGGCCAAATCCCTCTAGCTCTTTCTAACTCCACAGAGCTCAAATGGCTTGATATGGAGTCAAATATGCTGAGTGGAGAGTTGCCACATGAGATTGTAAGTTGGCCTCAACTACAATTCCTTTATTTGTCAGACAATGACTTTGTTAGCCATGATGGCAACACCAACCTTGAACCTTTCTTTGCTTCTTTGAGAAATTTATCTAACCTTCAAGAACTTGAATTAGCAGAAAACAATCTTGGCGGGAAGCTTCCTTCTAACATTGGTGATCTTCCTAAAAGCCTTGTACAGCTTCACCTTGATAACAATCTCATTTGTGGTCCTATTCATCCTCAAATATCCAACCTTGTTAACCTGACTCTACTGAATTTTTCCAGCAATCTACTAAATGGATCTATCCCCCCTAGCCTATGCAAGATGGAGAAGCTTGAGAGAATCTATTTGTCCAATAATTCACTATCTGGTGAGATTCCTTCAGCACTTGGTGGCATTCAACATCTTGGCCTTCTAGACTTGTCAAGAAACAAGTTTTCTGGTTCTATACCAGACAGTTTTGCTAACCTTCCTCAGTTACGAAGGCTTTTGCTGTATGAAAACCAGCTTTCTGGAACAATTCCACCGAGTCTTGGAAAATGCATCAATCTGGAGATTTTGGACCTATCTAAGAACAGAATTTCTGGGGTGATTCCTACAGAAGTTGCCGCCTTGACTAGCTTGAAACTATACTTGAACTTATCAAGCAACAACTTGAATGGCCCTTTACCATTAGAGCTCAGCAAAATGGACATGGTGCTAGCTATTGATTTATCTAACAACAATCTGTCAGGCAGAATCCCACCTCAACTTGAAAGCTGCATAGCTCTAGAATACCTTAACCTTTCTGGTAACTCCTTAGAGGGCCCTCTCCCTTTTTCACTAGGCCAATTGCCTTATATAAAGGCACTTGATGTCTCTTCAAATAGGTTAGCTGGGGCAATACCAGAGTCCCTTCTGTTATCATCTACTCTGAAGAAACTCAATTTCTCCTTCAACAAGTTCTCAGGTAATATATCAAACAAGGGAGCAATTTCATCTCTGACCATAGACTCTTTCCTAGGAAATGATGCTCTATGTGGTTCCATCAAAGGGATGCAAAGCTGCCACAAGAAACACAGCTATCATTTTGTTTTCCTTATAATTCCTGTGTTTCTATTTGCCACTCCCCTCTTGTGCATGTTTGGCTACCGATTGGCACACTGGGTGAAATTTCGAAGGCAACTGGCAATATTTGGAAGAAAAAACTATGATAATGACAAAGAGGAAAGAGAGGAGCTAAAGTATCCAAGCATTTCATACAAACAACTCATTGAGGCCACTGGAGGCTTCAGTGCTTCAAGCTTAATTGGTTCAGGAAGATTTGGGCATGTCTACAAAGGAGTGCTTAGAGATAACACCAGAATAGCAGTGAAGGTGTTAGATAGCACCACAGCAGGTGAATTTTCAGGGAGTTTTAGAAGAGAGTTCCAAATTTTGAAAAGGACTAGGCACAGAAACTTGATAAGGATCATCACGATCTGCAGCAAGCCAGAGTTTAAGGCTCTTGTTCTTCCTCTAATGCCAAATGGCAGCCTTGAGAGGCACCTATATCCAAGCCATGGATTGAGCCACAGGCTGAATTTATTTCAGGTAGTGAGGATATGTAGTGATGTTGCTGAAGGAATGGCCTATTTGCACCATTATTCACCAGTAAGAGTGATCCACTGTGATCTCAAGCCAAGCAATATACTTCTCGATTATGATATGACAGCTTTGGTTACTGATTTTGGAATTTCAAGGCTTGTGAAAGGTGATGAGAGTATGGCCTCATATGATAGCTCGGCATCTTTCAGTTCAACACATGGCTTGTTATGTGGTTCTGTTGGCTATATAGCCCCTGAGTATGGAATGGGAAAAAAGGCGTCAACCCAAGGTGATGTGTACAGTTTTGGAGTATTACTGCTAGAAATAGTGACAGGTAGGCCTCCCACAGATGTTCTTGTCCACGAAGGCTCAAGTTTGCATGAGTGGGTGAAGAGACAGTACCCATACAAGCTAGACAACATTGCTGAGAAGGCATTACAAAGGTTGTCACATTCTGAGCAACGTGACAGCAAAATCTGGCAAGATGTCGTACTGGAACTCATAGAACTGGGACTTCTCTGCACACAGTATAATCCTCTGACAAGGCCAAGCATGTTGGATGCGGCTCAAGAAATGGGCAGATTGAAGGACTTCTTGTGTAGTCCATCATCCTCTTTGCTAATTGATGATGCAGTCAACTCTAAGGTTGATGATTCCTTTTGTAGTGAAGATAATTTACTTGAGAATTAA 2976 0.4147 MGLCRFSLFAFFSVVVVHLGAHGEENAELVNDKSSLISFMRGIVSDPKNALASWKSPDIHVCNWAGIRCNNASDRVIEIDLNGKSLGGTISPAISNLSSLKILDLSENSFVGHIPKELGFLTQLGQLSLSWNFLEGEIPAELGSLRNLYYLDMGSNQLEGEIPQSLFCNGSSSLRYIDLSNNSLGGQIPLNNECMLLEVRFLLLWSNKLVGQIPLALSNSTELKWLDMESNMLSGELPHEIVSWPQLQFLYLSDNDFVSHDGNTNLEPFFASLRNLSNLQELELAENNLGGKLPSNIGDLPKSLVQLHLDNNLICGPIHPQISNLVNLTLLNFSSNLLNGSIPPSLCKMEKLERIYLSNNSLSGEIPSALGGIQHLGLLDLSRNKFSGSIPDSFANLPQLRRLLLYENQLSGTIPPSLGKCINLEILDLSKNRISGVIPTEVAALTSLKLYLNLSSNNLNGPLPLELSKMDMVLAIDLSNNNLSGRIPPQLESCIALEYLNLSGNSLEGPLPFSLGQLPYIKALDVSSNRLAGAIPESLLLSSTLKKLNFSFNKFSGNISNKGAISSLTIDSFLGNDALCGSIKGMQSCHKKHSYHFVFLIIPVFLFATPLLCMFGYRLAHWVKFRRQLAIFGRKNYDNDKEEREELKYPSISYKQLIEATGGFSASSLIGSGRFGHVYKGVLRDNTRIAVKVLDSTTAGEFSGSFRREFQILKRTRHRNLIRIITICSKPEFKALVLPLMPNGSLERHLYPSHGLSHRLNLFQVVRICSDVAEGMAYLHHYSPVRVIHCDLKPSNILLDYDMTALVTDFGISRLVKGDESMASYDSSASFSSTHGLLCGSVGYIAPEYGMGKKASTQGDVYSFGVLLLEIVTGRPPTDVLVHEGSSLHEWVKRQYPYKLDNIAEKALQRLSHSEQRDSKIWQDVVLELIELGLLCTQYNPLTRPSMLDAAQEMGRLKDFLCSPSSSLLIDDAVNSKVDDSFCSEDNLLEN 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1885g00003 991 CDD STKc_IRAK 670 957 - -
Pral1885g00003 991 Pfam Leucine Rich repeat 420 436 IPR001611 GO:0005515
Pral1885g00003 991 SMART LRR_typ_2 325 349 IPR003591 -
Pral1885g00003 991 SMART LRR_typ_2 373 396 IPR003591 -
Pral1885g00003 991 SMART LRR_typ_2 276 300 IPR003591 -
Pral1885g00003 991 SMART LRR_typ_2 97 121 IPR003591 -
Pral1885g00003 991 SMART LRR_typ_2 397 421 IPR003591 -
Pral1885g00003 991 SMART LRR_typ_2 145 169 IPR003591 -
Pral1885g00003 991 FunFam Leucine-rich repeat receptor-like protein kinase TDR 273 591 - -
Pral1885g00003 991 Pfam Protein kinase domain 666 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1885g00003 991 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Pral1885g00003 991 SUPERFAMILY L domain-like 327 581 - -
Pral1885g00003 991 Gene3D Ribonuclease Inhibitor 197 262 IPR032675 -
Pral1885g00003 991 ProSitePatterns Serine/Threonine protein kinases active-site signature. 787 799 IPR008271 GO:0004672|GO:0006468
Pral1885g00003 991 Gene3D Ribonuclease Inhibitor 263 597 IPR032675 -
Pral1885g00003 991 Pfam Leucine Rich Repeat 497 516 IPR001611 GO:0005515
Pral1885g00003 991 SMART serkin_6 664 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1885g00003 991 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 741 966 - -
Pral1885g00003 991 ProSiteProfiles Protein kinase domain profile. 664 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1885g00003 991 SUPERFAMILY Protein kinase-like (PK-like) 644 952 IPR011009 -
Pral1885g00003 991 SUPERFAMILY L domain-like 39 259 - -
Pral1885g00003 991 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 379 954 - -
Pral1885g00003 991 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 29 194 - -
Pral1885g00003 991 Gene3D Ribonuclease Inhibitor 29 196 IPR032675 -
Pral1885g00003 991 ProSitePatterns Protein kinases ATP-binding region signature. 670 692 IPR017441 GO:0005524
Pral1885g00003 991 Gene3D Phosphorylase Kinase; domain 1 630 739 - -
Pral1885g00003 991 Gene3D Transferase(Phosphotransferase) domain 1 741 963 - -
Pral1885g00003 991 Pfam Leucine rich repeat 351 410 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1885g00003 Pral-Chr1885 27683 31656 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1885g00003 32 959 Receptor kinase-like Gene Family AT3G47570 34.375 8.74e-157 487
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Pral1885g00003 Pkinase 4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1885g00003 - - qsa:O6P43_022222 1402.11