Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1883g00005 ATGGTGGATCACCGGCGAAACATATTGTCTCTTGGGTTCCTGTTCTTGTTGCTTTTTCAGTTCACATTTGAGCAGCTTGAGCCTCTGAGTTCACCCGCAGAGAGACTCGCCCTACTTCAGCTTCGATCTTCCTTGGGCTTGAGAAGCAGGGAATGGCCAATAAAAGCCGACCCTTGCTTAATCTGGAATGGCATACGCTGTGAGAATGGTAGAGTCACTGGCGTCAATATTTCTGGGTTTAGAAGAACAAGACTTGGCAGGCAAAACCCACAATTCTCTGTCGACGCTTTAGCCAATTTGACTTTCCTGCAATCCTTCAATGCGTCCAAGTTTCTTCTTCCTGGTCCTGTTCCTCACTGGTTTGGCCAAAAGCTTTCTTCACTCAAAGTGCTTGATCTTCGTTATTGCTCCATCATTGGTGCAATTCCTTCTACTCTTGGGAATCTAACAAGCCTAACCACTCTCTATTTATCTGATAATAACCTCACTGGAATCATTCCTGATAGTCTAAGTCAACTTGCAGCCCTTTCTGTTCTTGATCTTTCCCGGAATTTTCTCTCAGGATCCTTGCCCGATTCTTTTGCCTTTCTTGGGAATCTTTCTTTCCTCGACATTTCTTCCAACTATTTATCCGGTTCGATTCCCCAAGGCACTGGGGCAATTTCTAAATTACAATACTTGAATCTTTCCAACAATGGCTTAACTTCTTCTATACCTGCTCAACTTGGGGATCTTAGTAACCTAGTTGACCTTGATCTAAGTGATAATTACTTGTTCGGTCTGGTTCCTCCGGATTTAATGGGGTTGAGGAGCTTGCAGAGAATGAAGCTTGGGAACAACATTCTTGATGGACCTTTGCCGGAGAATTCGTTTCATACTACATCGGAGTTGCAGTTCATAGAGCTGAGACAAAATAATTTTACTGGGGCCTTGCCTGATAGGTTGTGGTATCTTCCAAGATTGAGCTTTGTGGATGTCTCCAGCAATAAGTTCACTGGTGTGCTTCCTAGTTCTAGCTCTTCTGCTAATGCTACTCCTACAGTCAAGGGCAATTTTTCTCATAATCTATTTTATGGAAGCATCACTCCTCTGCTCAAAAGGTTCAGTTTCATCGATCTGTCGAGCAATTATTTTGAGGGCAAGGTTCTGGATTTCGCAGTCAATGCATCACTGGGTAGTAACTGCCTGCAAAATGTATCAAATCAAAGGGCAACAGAAGAATGCCTCTCATTCTATTCCAGGAGGGGCCTCTCTTTTCATAATTTTGGGCAAGCAAACATGACAAGACCTCGTGCAGCAGAGAGCTCTGGGAAGAACAATGGAAGAAAATTTATACTAGCAGGAATTTTGGGTGGAGTTGGTTTGATCGCAGTTTTGGTGTTGTTAATTCTGCGCACTCGTAAGCGGAGCAAATCAAATAATACAGGAGCTCGTGTGGGTGCTGCTCTTGCTGGAGGCAATCCTGCACCTACTGATGCATTGATAGAATTATCAAAAGCAGGAGACTCATTTACATATCAGCAATTGCTCAAGGCTACAGGCAACTTCAGTGATGCAAATCTTATCAAACACGGTCACACCGGCGATCTGTTCAATGGTGTTTTGGAAAGTGGGATATCTGTAGTGATAAAAAGGATTGATTTGCGTTCAACTGAAAATGAGAATGCTTACATGTCAGAATTGGACCTTTTCAGTAAAGTTTCTCATCCAAGATTGGTTCCCCTGTTCGGTCATTGCTTAGAAAATGACAAAGAGAAGTTCCTGGTTTATAAACATATGCCAAATGGGGACTTATTGAATTGCATGCGCAACAGAGAAACTACACATAAAGATGGTACATTGCAGTCTTTGGATTGGATAACAAGATTGAAAATTTCTATTGGAACTGCGGAGGCCTTGTGTTTTCTTCATCATGAATGCAATCCACCCTTTGTTCACAGGGATATTCAAGCAACCAGTGTACTTCTAGATGATAAATATGAAGTCCGGTTAGGGAGTCTAAGTGAAGCCTGCACTCAGGGAGGGGATACTCATCAAAGGAGAATCTCAAGGTTGCTACGGTTACCCCAGTCATCTGATCAAGGCTCATCAGGTTCATCATCACCAGCAGTTTGTGCCTATGATGTGTATTGCTTTGGGAAAGTATTGCTTGAGATGGTAACTGGGAAGCTAGGAATTGGTGCATCCGGTGATGCACAAGTAAAAGAATGGTTGGAGCAGACACTACCTTACGTTAGTATTTATGACAAGGATCTGGTAACCAAGATTGTGGATCCATCCATGGTTGTCGACGAGGATTTCTTAGAGGAAGTGCGGGCAGTGGCCATCATCGCGAGGTCTTGCCTGAACCCTAAACCTTCGAGACGACCCCAGATGAGATATGTCCTCAAGGCTCTTGAAAACCCACTAAAAGTCATAAGGGAAGAGAGTTACAGTTCTGCAAGGCTGAGAACAACCTCTTCCAGAGGCTCTTGGAATGCTGCTCTGTTTGCCAGTTGGCGTCAGAATTCTGATATAACTGTAGTTCCGGCAGTTTCTGGTTCAAGAGCTGAAGAAGGCCAGCTTTCATCGTCCCGGAGGCGTCGTTCGAATGAGATAGTTCCGGAACCATCTAGCAGCATTCAAGAGGAGGACAAGCTCGAGTAG 2646 0.4392 MVDHRRNILSLGFLFLLLFQFTFEQLEPLSSPAERLALLQLRSSLGLRSREWPIKADPCLIWNGIRCENGRVTGVNISGFRRTRLGRQNPQFSVDALANLTFLQSFNASKFLLPGPVPHWFGQKLSSLKVLDLRYCSIIGAIPSTLGNLTSLTTLYLSDNNLTGIIPDSLSQLAALSVLDLSRNFLSGSLPDSFAFLGNLSFLDISSNYLSGSIPQGTGAISKLQYLNLSNNGLTSSIPAQLGDLSNLVDLDLSDNYLFGLVPPDLMGLRSLQRMKLGNNILDGPLPENSFHTTSELQFIELRQNNFTGALPDRLWYLPRLSFVDVSSNKFTGVLPSSSSSANATPTVKGNFSHNLFYGSITPLLKRFSFIDLSSNYFEGKVLDFAVNASLGSNCLQNVSNQRATEECLSFYSRRGLSFHNFGQANMTRPRAAESSGKNNGRKFILAGILGGVGLIAVLVLLILRTRKRSKSNNTGARVGAALAGGNPAPTDALIELSKAGDSFTYQQLLKATGNFSDANLIKHGHTGDLFNGVLESGISVVIKRIDLRSTENENAYMSELDLFSKVSHPRLVPLFGHCLENDKEKFLVYKHMPNGDLLNCMRNRETTHKDGTLQSLDWITRLKISIGTAEALCFLHHECNPPFVHRDIQATSVLLDDKYEVRLGSLSEACTQGGDTHQRRISRLLRLPQSSDQGSSGSSSPAVCAYDVYCFGKVLLEMVTGKLGIGASGDAQVKEWLEQTLPYVSIYDKDLVTKIVDPSMVVDEDFLEEVRAVAIIARSCLNPKPSRRPQMRYVLKALENPLKVIREESYSSARLRTTSSRGSWNAALFASWRQNSDITVVPAVSGSRAEEGQLSSSRRRRSNEIVPEPSSSIQEEDKLE 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1883g00005 881 SUPERFAMILY L domain-like 97 359 - -
Pral1883g00005 881 Pfam Protein tyrosine and serine/threonine kinase 522 798 IPR001245 GO:0004672|GO:0006468
Pral1883g00005 881 Gene3D Ribonuclease Inhibitor 196 411 IPR032675 -
Pral1883g00005 881 FunFam Putative LRR receptor-like serine/threonine-protein kinase 593 819 - -
Pral1883g00005 881 SUPERFAMILY Protein kinase-like (PK-like) 498 799 IPR011009 -
Pral1883g00005 881 MobiDBLite consensus disorder prediction 854 881 - -
Pral1883g00005 881 SMART LRR_typ_2 173 196 IPR003591 -
Pral1883g00005 881 SMART LRR_typ_2 221 245 IPR003591 -
Pral1883g00005 881 SMART LRR_typ_2 318 341 IPR003591 -
Pral1883g00005 881 SMART LRR_typ_2 197 220 IPR003591 -
Pral1883g00005 881 SMART LRR_typ_2 149 172 IPR003591 -
Pral1883g00005 881 ProSiteProfiles Protein kinase domain profile. 516 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1883g00005 881 FunFam Leucine-rich repeat receptor protein kinase EMS1 191 289 - -
Pral1883g00005 881 Pfam Leucine rich repeat 223 280 IPR001611 GO:0005515
Pral1883g00005 881 Pfam Leucine rich repeat 151 210 IPR001611 GO:0005515
Pral1883g00005 881 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 432 824 - -
Pral1883g00005 881 Gene3D Ribonuclease Inhibitor 31 195 IPR032675 -
Pral1883g00005 881 ProSiteProfiles Leucine-rich repeat profile. 151 172 IPR001611 GO:0005515
Pral1883g00005 881 MobiDBLite consensus disorder prediction 844 881 - -
Pral1883g00005 881 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g16250 31 190 - -
Pral1883g00005 881 Pfam Leucine Rich Repeat 127 149 IPR001611 GO:0005515
Pral1883g00005 881 Gene3D Transferase(Phosphotransferase) domain 1 593 819 - -
Pral1883g00005 881 FunFam Predicted protein 487 592 - -
Pral1883g00005 881 Gene3D Phosphorylase Kinase; domain 1 489 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1883g00005 Pral-Chr1883 48401 51972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1883g00005 33 690 Miscellaneous Gene Families AT2G16250 54.491 0.0 682
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Pral1883g00005 PK_Tyr_Ser-Thr 3.4e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1883g00005 - - qsa:O6P43_001901 1118.99