Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1883g00004 ATGGCGTCTGCTGAAGTTGAATTTAGGTGCTTCGTCGGGGGGCTCGCATGGGCTACCGACAGCGAGGCCCTTGAGAAGGCCTTTGCTCCCTTTGGCGAAATCGTCGAATCGAAGGTTATTAACGACCGCGAGACTGGCAGGTCGAGAGGGTTCGGATTCGTAACCTTCTCGTCTGAGCAGTCCATGAGAGATGCTATCGAGGGAATGAACGGCCAGGACCTTGATGGCCGTAATATTACTGTGAACGAGGCTCAATCCCGGGGCCGAGGTGGCGGTGGAGGCGGTGGGTATGGCAGTGGCGGAGGCTACGGAGGTGGTGGATATAGCCGTGGTGGAGGCGGATACGGGGGCGGGGGTGGAGGCCGCCGTGAAGGTGGATACAACCGTAACGGCGGCGGAGGCTACGGTGGAGGCGGTGGCGGCTACGGTGGTGGTTATGGCGGTGGGCGTGACCGTGGTTATGGCGACGGTGGATCTCGGTACTCCAGAGGCGGAGGTGCTTCTGACGGAAGCTGGAGGAGCTAG 525 0.6114 MASAEVEFRCFVGGLAWATDSEALEKAFAPFGEIVESKVINDRETGRSRGFGFVTFSSEQSMRDAIEGMNGQDLDGRNITVNEAQSRGRGGGGGGGYGSGGGYGGGGYSRGGGGYGGGGGGRREGGYNRNGGGGYGGGGGGYGGGYGGGRDRGYGDGGSRYSRGGGASDGSWRS 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1883g00004 174 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Pral1883g00004 174 MobiDBLite consensus disorder prediction 119 174 - -
Pral1883g00004 174 Gene3D - 2 119 IPR012677 -
Pral1883g00004 174 FunFam Glycine-rich RNA-binding protein GRP1A 2 111 - -
Pral1883g00004 174 SUPERFAMILY RNA-binding domain, RBD 8 96 IPR035979 GO:0003676
Pral1883g00004 174 MobiDBLite consensus disorder prediction 69 103 - -
Pral1883g00004 174 CDD RRM2_NsCP33_like 9 84 - -
Pral1883g00004 174 PANTHER GEO13361P1-RELATED 6 157 - -
Pral1883g00004 174 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Pral1883g00004 174 SMART rrm1_1 9 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1883g00004 Pral-Chr1883 37519 38655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1883g00004 10 88 Eukaryotic Initiation Factors Gene Family AT2G23350 32.911 4.59e-06 43.9