Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1883g00002 ATGTTGCGCTGTCTCGACAACTCCGGGAACTTCACCGGCAACTGCTCCGACATGACGGTGTTGGAAAGGCAAAGGATGAAGATGAAATGGCAACAAGAGCAACCATATCACGAAAACCAGAGCTTGTATGGTGATTCTGCGCTCGGTGAGGTCGTGGCTAAGTCCATGAAGCCCGAGCTGGGCCACCTCCACTTTCCCAGTTTCGGGTTGGGGTCTTCTAGCTTTGAAGCGGCTTCTGCAATTTCAGCAACTTCCATGGTGGGAGTTGAAGAATCCAGAGGCACAGGCTCTGTTCCAGAGAAGGAGAAGATGAGCTCTGCATGTGGGAAGCACAGCTTCAAGAAGAGAAAATCCGATAAGATTCATAGCTCCAAGGTTGTTGCAGAAAGTGAAAACAAAGAGAAGAAGAAGAAAGGAGGTGGAGAGGAAGGAGAATCCAAAATAACAGAGCAAAATAGCAACAAGAACACCACAACCAACAACAGCAGCAGCAAAGAAACATGTGGAGGCACCTCAAAAGGAAATTCGAAGGCGTCCGAGGTTCAAAAGACTGATTACATCCATGTGCGAGCACGCCGTGGCCAAGCCACTGACAGCCATAGCCTAGCTGAAAGAGTTAGAAGGGAAAAGATCAGCGAGAGAATGAAGTATTTGCAGGATTTAGTACCAGGTTGTAACAAAATCACAGGAAAAGCTGGAATGCTTGATGAGATCATCAACTATGTTCAATCTCTTCAACGCCAAGTAGAGTTCTTGTCAATGAAATTGGCTGCTGTAAACCCAGCTCTTGACTTCAACCGAGATGATCTGTTCTCCAAAGAGGTTTTTAGTACTCGTGGTCCGAGTTTTGCCACATTTGGGATGGGATCAGACATGAACAATCCAGCATATCTTCAGTTCAACTCAGGGCAACAGTTTCCTCCTCCCTCAGTCCCCGAAACGTTTCTTGACTCCTGCTGTTTCCCTCAAATTCTACCATCCTCTACTTACGAATCTGATCTCCACAAGCTAATCAGTGTGGGTTCTGATCAACCACGAGCAGTATCATCATCCTTTCTTTCTCAGCCATTCACAGGTGTAGTTGAAGCTAGCCATCCGAAGATGGAGATGTAG 1113 0.4672 MLRCLDNSGNFTGNCSDMTVLERQRMKMKWQQEQPYHENQSLYGDSALGEVVAKSMKPELGHLHFPSFGLGSSSFEAASAISATSMVGVEESRGTGSVPEKEKMSSACGKHSFKKRKSDKIHSSKVVAESENKEKKKKGGGEEGESKITEQNSNKNTTTNNSSSKETCGGTSKGNSKASEVQKTDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPALDFNRDDLFSKEVFSTRGPSFATFGMGSDMNNPAYLQFNSGQQFPPPSVPETFLDSCCFPQILPSSTYESDLHKLISVGSDQPRAVSSSFLSQPFTGVVEASHPKMEM 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1883g00002 370 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 103 296 IPR024097 GO:0006355
Pral1883g00002 370 MobiDBLite consensus disorder prediction 90 182 - -
Pral1883g00002 370 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 193 262 IPR036638 GO:0046983
Pral1883g00002 370 MobiDBLite consensus disorder prediction 150 182 - -
Pral1883g00002 370 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 195 245 IPR011598 GO:0046983
Pral1883g00002 370 FunFam Basic helix-loop-helix transcription factor 192 264 - -
Pral1883g00002 370 MobiDBLite consensus disorder prediction 122 149 - -
Pral1883g00002 370 Pfam Helix-loop-helix DNA-binding domain 199 246 IPR011598 GO:0046983
Pral1883g00002 370 SMART finulus 201 251 IPR011598 GO:0046983
Pral1883g00002 370 CDD bHLH_AtBPE_like 185 270 - -
Pral1883g00002 370 Gene3D - 192 265 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1883g00002 Pral-Chr1883 10854 13159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1883g00002 9 337 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 43.417 3.49e-67 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral1883g00002 HLH 2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1883g00002 - - pcin:129286940 524.242