Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1880g00004 ATGATGAGAATCCGAAACTCCATACCCCACCATCTTCCTCTTTTCTTCTTCCTCCTCCTTCATCTTTTTCATCCTTCACAAGCTCAGGACCAGATACAACCCAACACCACCGGCTACCAGTGCCCCGCTAATCAGACCGGCTCCGGCTACCCGTGCCGGACCTACGCCTTTTACCAAGCTTCAGCTCCTAATTTCCTCGACCTCGCCTCCATTGGTGACCTCTTCTCCGTTAGTCGCCCCATGATAGCACAACCAAGCAACATTTCTTCTCCTAATTCAACTTTAGCCCCAAACCAACCCCTCTTCGTTCCTTTATTTTGCTCCTGCAACTTCATCAACTCAACCTTCGGTGCCATCTCCTATGCGAATCTCTCCTACACCATCAAGAAAGGAGACACGTTCTACCAAGTCTCCTCGTTTAGCTACAGGAACCTCACGACCTACCAATCCGTTGAAGTCGTGAACCCCACCCTTATCCCGACGAATTTGACAATCGGTGTCAGCGCCGTGTTCCCTGTGTTCTGCAAGTGCCCTAACACGACGCAATTGCGAAACGGAGAGAACATCCTGATTTCCTACGTGGTTCAACCGAATGATAACGTATCGTCGATTGCCACCATGTTTGGATCGAAACCGCAGTCAATAATCGATGCTAACCGTAAAAATTTCCGAGAATTTGATACTATCTTCGTTCCGGTGTCGCGATTGCCGGTGCTGACGCAGCTTCCGGTTAATACTTCGGCGCCGCCGGCTTCGTCCCCTGCCGCATCTGTAACTTCCCGCGACAGAACAGGAACTGTGAGAGGATTGGCGATTGGGCTAGGGATTGTGGGGTTATTGTTGATTCTGGTTTTGGGGCTGTGGGTTTACAGAGAGGCTCTATTCAAGGACAAATTGGCGGTGGTGGTCGGAGATGAAGAGAAGCATAAGCAGAGCTTTGCGACGGGCACGAAGGGATCGAAGGAAGCGGAGGCGAAATTGATGGCGAATGTGTCGGATTGTTTGGATAAGTATAGGGTTTTTGGGTATGAAGAACTGAGAGAAGCCACAAATGGGTTTGATCAGAGATGCTTGATTCTTGGGTCTGTGTATAAAGGAACCATTGATGGAGAGGTCTATGCCATCAAGAAGATGAAGTGGAACGCTTACGAGGAGCTCAAGATCTTACAGAAGGTGAACCATGGGAATTTGGTGAAGTTAGAGGGCTTTTGCATTGACGACGATGAAGCAAACTGCTATCTAGTCTATGAATATGTTGAAAACGGATCCCTCTACTCATGGTTGCATGAAGACCGGACAGAGCGGTTGAACTGGAAAATGAGGCTGCACGTCGCCATTGATGTAGCCAATGGCTTGCAATACATCCACGAGCACACAAGGCCAAGGGTTGTCCACAAAGACATCAAGAGTAGCAACATCCTCTTGGATGCTAACATGAGAGCCAAGATAGCTAATTTCGGACTCGCAAAGTCGGGAATGAATGCCATCACAATGCACATTGTGGGAACTCAAGGTTACATAGCTCCTGAATATTTAGCTGATGGTGTAGTCTCAACCAAGATGGATGTGTTCTCTTTCGGGGTAGTTCTGCTTGAACTAATCACAGGCAAAGAAGCCATTGATGATAGAGGAAATCCCTTGTGGACAACTGTGGTAAGAGCTTTTGAATTGGGTAGTGACCAAGAGAAGAACAAGAGACTAAGGGAATGGTTGGATAGTTCTCTCTTGAGAGAGACATGTTCAATGGAAAGTCTCAGGAGTGTGCTTAATGTTGCCCTTGCTTGCTTGCATAAGGATCCAACAAAGAGGCCTAGCATGGTGGATGTTGTTTATGCTTTGAGTAAAAGTGAAGATTCTGGTTTTGATACCTCAGATGATACCATGGATTCACCGTTAGTATCAGCAAGGTGA 1911 0.4746 MMRIRNSIPHHLPLFFFLLLHLFHPSQAQDQIQPNTTGYQCPANQTGSGYPCRTYAFYQASAPNFLDLASIGDLFSVSRPMIAQPSNISSPNSTLAPNQPLFVPLFCSCNFINSTFGAISYANLSYTIKKGDTFYQVSSFSYRNLTTYQSVEVVNPTLIPTNLTIGVSAVFPVFCKCPNTTQLRNGENILISYVVQPNDNVSSIATMFGSKPQSIIDANRKNFREFDTIFVPVSRLPVLTQLPVNTSAPPASSPAASVTSRDRTGTVRGLAIGLGIVGLLLILVLGLWVYREALFKDKLAVVVGDEEKHKQSFATGTKGSKEAEAKLMANVSDCLDKYRVFGYEELREATNGFDQRCLILGSVYKGTIDGEVYAIKKMKWNAYEELKILQKVNHGNLVKLEGFCIDDDEANCYLVYEYVENGSLYSWLHEDRTERLNWKMRLHVAIDVANGLQYIHEHTRPRVVHKDIKSSNILLDANMRAKIANFGLAKSGMNAITMHIVGTQGYIAPEYLADGVVSTKMDVFSFGVVLLELITGKEAIDDRGNPLWTTVVRAFELGSDQEKNKRLREWLDSSLLRETCSMESLRSVLNVALACLHKDPTKRPSMVDVVYALSKSEDSGFDTSDDTMDSPLVSAR 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1880g00004 636 ProSiteProfiles Protein kinase domain profile. 343 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1880g00004 636 FunFam PTI1-like tyrosine-protein kinase 3 419 627 - -
Pral1880g00004 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Pral1880g00004 636 Gene3D LysM domain 190 234 IPR036779 -
Pral1880g00004 636 Gene3D Phosphorylase Kinase; domain 1 323 418 - -
Pral1880g00004 636 CDD LysM 191 220 IPR018392 -
Pral1880g00004 636 MobiDBLite consensus disorder prediction 617 636 - -
Pral1880g00004 636 Gene3D Transferase(Phosphotransferase) domain 1 419 630 - -
Pral1880g00004 636 SUPERFAMILY Protein kinase-like (PK-like) 337 613 IPR011009 -
Pral1880g00004 636 Pfam Protein kinase domain 361 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1880g00004 636 Pfam LysM domain 193 225 IPR018392 -
Pral1880g00004 636 SMART serkin_6 353 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1880g00004 636 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 14 616 - -
Pral1880g00004 636 ProSiteProfiles LysM domain profile. 191 238 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1880g00004 Pral-Chr1880 69494 73430 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1880g00004 7 615 Receptor kinase-like Gene Family AT2G23770 33.073 1.96e-85 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Pral1880g00004 Pkinase 1.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1880g00004 - - lang:109352405 857.825