Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1879g00006 ATGACAGACTATAGGTCGCCGCCGACTATGAACCTTTGGTCCGATGACAACTCCTCCGTTATGGAGGCTTTCATGAGCTCCGATCTATCCGTGCTCTGGCCTGCTCCGCCTCAGCCCCAGTCCTCTGCTTCCACTACTACTCCTGGACCCGACCCCACCAAGCCTCTTCCTCAGTCTCAGTCTTCCGCTGCTCTCTTCAATCAAGAAACCCTTCAGCAGCGCCTTCTGGCTTTGATTGAAGGTGCCAGAGAGAGCTGGACCTATGCTATCTTTTGGCAATCGTCGTACGACTACTCCGGCGCGTCCTTGCTCGGCTGGGGCGATGGGTACTACAAAGGGGAGGAAGATAAAGGAAAAGGGAAGGCCAAAACGCTGTCGTCTGCGGCGGAGCAGGAGCACCGGAAGAAGGTTCTACGCGAGCTGAATTCCCTCATTTCTGGATCCTCTGCCCCCAGCGACGACGCCGTGGACGAAGAAGTCACCGATACGGAGTGGTTCTTTCTCGTTTCCATGACTCAATCGTTTGTCAACGGCGACGGGTTACCGGGTCAGGCCTTCTACAATTCTACCCCTGTCTGGATCACCGGTGGGGAGAGGCTGGCGGCTTCGACCTGCGAAAGAGCGAGACAGGGCCAGGTTTTCGGGCTTCGGACTTTGGTTTGTATCCCATCGGCGAATGGGGTGGTGGAGCTGGGATCCACTGAATTGATTTTCCAGAACTCGGATCTGATGAACAAGGTGAAAGTATGGTTCAATTTCAACAATCCCGAAATTGGTTCGTGGCCTCTCATGACTCCTAATGCCGATCAAGGTGAGAACGACCCTTCCTCGCTTTGGCTTAACGATCCGTCTTCTGGAATTGAAATCAGAGATTCGACCAACGCCACTGTTCCGGCGTCCGTTCCGAGCTCGAATAACAGTCACAACATCCAGTCAGTTGCTAAGCCAATGCAGTTTGAAACCCCTGTTTCGAGTACTTTAACTGAAGCACCAAGTGTTGTTCATGTCCCGAATACTCAATATGGTAACCAGCAACGGCAACCGGCACAGCAATCGCAGAGCCAGGGGTTCTTCTCGAAGGAGTTGAACTTTTCTGAATATGGGTTCGACGGAAACGGCCTAAAGAACGGGAATATGCATTCCTTGAAGCCGGAATCAGGTGAAATTTTGAACTTTGGGGATAGCAAGAGGAACTCTTATGGTGGGAATGGGAATTTCTTTACAGGACAGAGTCCATTCGTCGCAGAAGACAACAAGAAGAGGAAGTCACCTACTTCCAAGGGTAGTAACGATGAAGGGATGCTCTCGTTTACTTCCGGTGTGGTTTTGCCCACTTCTAACATGAAGTCTTCTGGCGGCGGCGGCGATTCCGATCACTCGGATCTTGAAGCTTCGGTGGTGAAGGAAGCGGATAGTAGCAGAGTGGTAGAACTAGAAAAGCGACCTCGCAAAAGAGGACGAAAGCCGGCGAATGGCAGGGAGGAGCCTCTGAATCACGTTGAAGCAGAGAGGCAGAGGAGAGAGAAGCTGAACCAGAGGTTCTACGCACTTCGTGCCGTAGTCCCAAACGTGTCAAAAATGGACAAAGCATCGCTTCTGGGCGACGCCATATCTTACATCAACGAGCTCAAGTCGAAGCTCCAGAATTTAGAATTGAACAATAATGATTTACAGAAGCAGCTGGATTCAGTCAAGAAGGAACTCGAGCAGGCCACTAGTAAAGATTCTCGTGCACCCCCACCAGACAAAGAACAAAAGACCTCAAACAACCAAGTAAACGGCAAGCTAATAGATTTAGACATCGATGTGAAGATCATAGGTTGGGATGCAATGATTCGAATCCAATGTAGCAAGAGGAACCATCCGGCAGCGAGATTGATGGCCGCTTTACAGGAGCTAGACCTGGAAGTGAACCACGCGAGTGTGTCGGTAGTGAATGATCTGATGATCCAACAAGCCACTGTAAAGATGGGAAGTCGATTTTACACACAGGAGCAGCTCCGGCTAGCACTTGCGTCCGAGGTTGGAGATGTTCGATAA 2040 0.5093 MTDYRSPPTMNLWSDDNSSVMEAFMSSDLSVLWPAPPQPQSSASTTTPGPDPTKPLPQSQSSAALFNQETLQQRLLALIEGARESWTYAIFWQSSYDYSGASLLGWGDGYYKGEEDKGKGKAKTLSSAAEQEHRKKVLRELNSLISGSSAPSDDAVDEEVTDTEWFFLVSMTQSFVNGDGLPGQAFYNSTPVWITGGERLAASTCERARQGQVFGLRTLVCIPSANGVVELGSTELIFQNSDLMNKVKVWFNFNNPEIGSWPLMTPNADQGENDPSSLWLNDPSSGIEIRDSTNATVPASVPSSNNSHNIQSVAKPMQFETPVSSTLTEAPSVVHVPNTQYGNQQRQPAQQSQSQGFFSKELNFSEYGFDGNGLKNGNMHSLKPESGEILNFGDSKRNSYGGNGNFFTGQSPFVAEDNKKRKSPTSKGSNDEGMLSFTSGVVLPTSNMKSSGGGGDSDHSDLEASVVKEADSSRVVELEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKSKLQNLELNNNDLQKQLDSVKKELEQATSKDSRAPPPDKEQKTSNNQVNGKLIDLDIDVKIIGWDAMIRIQCSKRNHPAARLMAALQELDLEVNHASVSVVNDLMIQQATVKMGSRFYTQEQLRLALASEVGDVR 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1879g00006 679 MobiDBLite consensus disorder prediction 33 49 - -
Pral1879g00006 679 MobiDBLite consensus disorder prediction 401 504 - -
Pral1879g00006 679 MobiDBLite consensus disorder prediction 428 454 - -
Pral1879g00006 679 Pfam Helix-loop-helix DNA-binding domain 498 543 IPR011598 GO:0046983
Pral1879g00006 679 FunFam Transcription factor bHLH13 487 561 - -
Pral1879g00006 679 MobiDBLite consensus disorder prediction 31 60 - -
Pral1879g00006 679 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 494 543 IPR011598 GO:0046983
Pral1879g00006 679 MobiDBLite consensus disorder prediction 564 591 - -
Pral1879g00006 679 SMART finulus 500 549 IPR011598 GO:0046983
Pral1879g00006 679 CDD bHLH_AtAIB_like 491 567 - -
Pral1879g00006 679 Gene3D - 486 574 IPR036638 GO:0046983
Pral1879g00006 679 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 495 567 IPR036638 GO:0046983
Pral1879g00006 679 Coils Coil 533 574 - -
Pral1879g00006 679 PANTHER MYC 44 673 IPR045084 GO:0003700|GO:0006355
Pral1879g00006 679 MobiDBLite consensus disorder prediction 564 582 - -
Pral1879g00006 679 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 71 251 IPR025610 -
Pral1879g00006 679 MobiDBLite consensus disorder prediction 461 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1879g00006 Pral-Chr1879 16791 19383 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1879g00006 1 676 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 55.029 0.0 650
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral1879g00006 bHLH-MYC_N 2.3e-54 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1879g00006 K13422 - vvi:100250607 920.998