Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1877g00003 ATGGGGAATTTGAATTGGAGTGCCAGCTCTAACGGGATCAAAGAAATTCAACGGACGGAAAGCGGGAATGAAGAGAAATCCAAAGAAAGTATATCTACTAATGGTAATTCCAGCATAACGGATTGTGTAAAAGACGGGCTTGATTTGAATGCCAGACTTAACCTGAACGAGGCCTTGGATCTGAATGATGGATGTAGCTCACATGTTAATACTGAGAATGGTTTGAAGGAACGGGGTTGCATCGATTTAAATGTGGATGTGAATCATGAAATTGATGCCAGCGGGGACGTGACTGCTGTAGATTGTCCAGCAGTTGGAATTTCGAAGCGGGAATGTAATTTTGATTTGAATGAGGAGGTATGCGATGAAGCTAAGGAAACTCAGGGTGATAATGCTGGAGAGAAACTGTCAGATGGAGGTGGTTTGTTTAAAATGGGGCAAAGCCCTAAGTCAGAGACGGATATTAATCAAAATTCTGTACAAGATGATAGTGTTAAAGGAAATTTGGATTATATCCCTGATTCGATGAAATTGGAGGGAATTGATTGTTTCCGTGAGCGTACAGGTGAAGACGCTTCTGTGAGTATGATTGAGCAAAAGGAAGATGGAGGTACTGTGGCTTTTGACTCTCATGGGGTTTCAAATGCTATTTCTTCTAAGGATTGTGATTCTCTGGAGGTTTGGCAGGAGCATAGTCCTGAAGCTGGTATTGCTATAACTCAAGAATGTCAAAATGATCCAGGAAGCCAATATAAACAAGGAAGGGGCCGAAGGAAGAGAAGAAAACTATCAGAGAATCTAAAGGCCGCTCCAGAGACAGTTTTAAGGAGGAGTTCTCGCCGTGCATCAGCTCTAAAACGTGACTCAAGCCCTATAACAATGAATGTGATGGATGATCCTTTCATGTCTCCAGGGCCCAGTGCCATAACAGAAGAAAAAACGGTTGTTTCTGGTTCTGAGCAGTATGAACAGTGCAGTGAACTTCCGCCAAAGCTGCAACTCCCCCCTTCTTCTCAAAATTTGAACTTAGATAACATTCCTATTCTTGATCTTTTTTCCATTTATGCTTGTTTGAGGTCCTTCAGTACTATACTATTTTTAAGTCCTTTTGAGTTGGAAGATTTTGTAACTGCACTGAAGAGTGTAAATCCTAACATATTATTTGACAACATTCATGTTTCTATTTTACAAACTCTTAGAAAGCACTTGGAATACCTTTCAAATGAGGGTTGCCAATCTGCATCCGATTGCCTGAGAAATTTGAACTGGGATTTGTTGGATCTGGTCACATGGCCTATTTTTATGGCTGAGTATCTTCTGATTCATGGTTCTGGACTTAAAACTGGTTTTGATCTTAAGTACTTCATGTTTGGGGGTGACTACTACAAGCAGCCTGTAACTTTAAAGATTGAAATTCTTCAGTGCCTTTGTGATGATATGATGGAAGTGGAAGCCATAAGGTTGGAGCTTAACAGAAGATCTTTGGTTACTGAGGCTGATATGAGTTTTGATCAAAGTATGTATTTTGACATTTGCAAGAAAAGAAGAGCTCCGATGGACATGTCTGGTGGCTTTTCTCTGTCTGAGGAGGTTGTTGATGTCACAACTGACTGGAACAGTGATGACTGTTACCTTTGCAAGATGGATGGAAGTTTAATATGTTGTGATGGCTGCCCTGCTGCATTCCACTCCAGGTGTGTAGGGGTTGCAAATGACCATTTACCTGAAGGTGACTGGTATTGCCCTGAGTGTGCAATTGGCAGACGTAAGCCTTGGATGAAACCACAAAAATCACTTCGAGGAGCAGATCTTTTAGGAATTGATCCTCATGGTCGTCTTTATTTTGATAGCTGTGGTTACCTGTTAGTATCAGATTCATCTGACATGAGATCCTTGTTCAATTACTACCACATTAATGATCTGCATGTTGTAATTGAGGTGCTAAAAGCGGCTGATGCTTTCTATGGTAGCATATTAATGGCAATCTGCAAGCACTGGGAAATTCCTTTTAACTTAAATGGAGCAGCTTATCAGCTGGAACTCTCAAATCAAAGTGCTAGCAGGTACATGCACATGAAGACAGAATACTCTGCTATATATCCATCCCCAGCACCTTTTTCATCCTCAGAAGCATTCTTGGACACTAATCAGGCTGCCGATCAAAGAAATTATGAAGAAACTTCTACTGCACAACCTTTTGGCCAAGAGTTTCTCAAAGCTGAGAGACAGTTAGATTCAGTGATAACAACAGAAAGTCCCTGTGTTGCTTCAGAGGTATCAGCTGAAACAACAAAAATGAGATCAACCACTGATGATGATCCTCGAACATATGGATTCCATGATTCCAATAGACCTGGTGGAGCCCTGAATCAGCTGGGAATACCAGAGAAATTGCACACAGTCAGTCGTGCTTCTCTGAGGTCTTCCCGCTTAGATACAAGCCACAAGGTAAACTTAACATCTGCAGGTGCTGGTTATACCGCATCAGCTAAGTCCACTGGGAATAGAGCTACTTCAGAAATGCTATGTGGAACTGACTACATAAACTATTACAGCTTTGCTCGAACAGCTTCACTAGTGGCTGAGGAGTTGATACGTAAATCTCCTGAAAAAACCAACAAGAGTATTGAAATGTCTGAAGAAGACTTAATTTCAGAACAAGCAAAGGCTATTATTAAGAAATCTACGAACTTCTGCTGGCCAAGTTCTCAAAGTGTTAATGCAGCTGCCCGAAAGGAAAAATGTGGGTGGTGCTTTACATGCAAAGTTGAAAATGATGACAGAGATTGTTTGTTTAACTCTGTGGTGATGCCTATTCAGGAAGTTTCTAAAAGTGATTTAGTTGGATTTCAACCAAAGAACCAGAATGCCCATCTTAAAGATGTCATATTTTATATTCTCTCCCTTGAGGATCGATTACGTGGGCTTCTACTGGGGCCATGGTTGAGCCTCCATCATTCTAAGAATTGGCGTAACAATCTTCTTAAGGCATCTGATGTTGCATCTATTAAATGCTCATTACTGACTTTAGAGTCCAACTTGCGGCCTCTTGCTCTTTCGGCAGACTGGTGGAAACATGTGGATTCTGCTGTTACCATGGGTTCGGCTTGTCATATTGTGGCCAGTTCACGCACATCTTGGAGGCATAGTATTGGAAGGAAAAGGGCAAGGTGCTCTGATATTGAGTCCAGTGCATCTTCTAACGCAAGTGGTTTGGGAACGTATTGGTGGAGAGGTGGTCGGCTTTCCCGTCATTTGTTTAATTGGAAGGTTCTGCCATGCTCTTTGGTTACCAAGGCTGCTAGACAAGCTGGGTGTGCAAAGATACCGGGCATTCTATATCTTGAGAATTCTGATTTTCCAAAGAGAAGCAAATGTGTTGCTTGGAGAGCTGCTGTTGAGACATCAATTAGTGTGGAGCAACTTGCCATCCAGGTTAGAGAGCTTGATTCAAACATTAGGTGGCATGACATTGAGAATACTCATCCTCTATGGGCGTTGGACAAGGAATCCAGAAAATCAATCAGGCTGTTCAAAAAAGTAATTGTACGCAGGAAGAGCACTGAAAGGGAAACCGTAAAATATCTTCTTGATTTTGGGAAGAGAAGGGCTATCCCAGATATTGTTAAGAAACATGGTTCTTTGTTGGAAGAATCCTCAAGTGACAGGAAAAAATATTGGCTGGAAGAACCTTATGTTCCCTTGCATCTTATAAAGAATTTTGAGGACAAAAAAATTGCTCGCAAGTCCAATGAAACGAAACCAGGAAAAGTTCTGGCGATCAGTGGATTTAATAAGAGAGCTACGCAAAAACGGGGTTTTTCATATTTGTTTTCTAGGATGGAAAGGCCTACCTATCATCAGTGCGGCCACTGCAACAAAGATGTCCTAACCAGGGAAGCTGTGGGCTGCCAGTACTGTAATGGATTCTTCCATAAGAGGCATGTCAGAAAATCTGGTAGCACTGCTGAGTGCAGATATTCGTGTCACAGATGCCTGGATGGGATGCATGTAAATTCTAATTCTAAAAGAAGAAAACTTGACCCAAAACTAGGGAATATTCAGTCACAAAAGGGTCGAAAGGTTCCTTCAGTGGGCAGACCAGTTAAGCAAAAATGCAGCAAAAGGCCATTGAGTAAGAGGCGGCAAGGAAAATCTCAAACCAATAAGAAGGTCCCGTCAAGTATACCTCTTCGTCGTTCAGCTAGGAAGGCCAAATGCTTGTATGTGCAAAAGAAAAGGAATGTGGGACGTAAAAAGGGAAAGAAAAGTAAATCCAAGAAGGTGACATCTAGGAAGCCCAAGGAAACATCTAGGAAGCCCAAGGAAACTACTTCTCGTTCTAAGACAGCAGTAACTTTTGAGCGTAAGAAACGAACTCATATCTGTAATAGTTACTGGCTCAATGGTCTTAGGTTGTCCACAAAGCCAAATGATGAACGAGTAATGCTGTTTAAGGAGAAAAAGCATCTTGGTACCTCAGAAGGTCTTTCTAGCACCTTTGATCAACCAAAATGTCATCTTTGTTGTGGAGATGCGTGCACTTTGAATTATATTGCTTGTGAAATCTGTGGAGAGTGGTTTCATGGGGATGCTTTTGGACTCACTCTGGAGAATGTCAGACAACTCATTGGATTTCGGTGTCATGTTTGTCGTGATAGGACTGCACCAATGTGTCCCCACAAGAATAATAATGCCATGACTCATGCTGAAATCAAAGCAGCAACCGAGTATGCAGAGGAACTACATAATTCTGTTTCACTTCAGCCATTGAGTCAGGTTTAG 4785 0.4169 MGNLNWSASSNGIKEIQRTESGNEEKSKESISTNGNSSITDCVKDGLDLNARLNLNEALDLNDGCSSHVNTENGLKERGCIDLNVDVNHEIDASGDVTAVDCPAVGISKRECNFDLNEEVCDEAKETQGDNAGEKLSDGGGLFKMGQSPKSETDINQNSVQDDSVKGNLDYIPDSMKLEGIDCFRERTGEDASVSMIEQKEDGGTVAFDSHGVSNAISSKDCDSLEVWQEHSPEAGIAITQECQNDPGSQYKQGRGRRKRRKLSENLKAAPETVLRRSSRRASALKRDSSPITMNVMDDPFMSPGPSAITEEKTVVSGSEQYEQCSELPPKLQLPPSSQNLNLDNIPILDLFSIYACLRSFSTILFLSPFELEDFVTALKSVNPNILFDNIHVSILQTLRKHLEYLSNEGCQSASDCLRNLNWDLLDLVTWPIFMAEYLLIHGSGLKTGFDLKYFMFGGDYYKQPVTLKIEILQCLCDDMMEVEAIRLELNRRSLVTEADMSFDQSMYFDICKKRRAPMDMSGGFSLSEEVVDVTTDWNSDDCYLCKMDGSLICCDGCPAAFHSRCVGVANDHLPEGDWYCPECAIGRRKPWMKPQKSLRGADLLGIDPHGRLYFDSCGYLLVSDSSDMRSLFNYYHINDLHVVIEVLKAADAFYGSILMAICKHWEIPFNLNGAAYQLELSNQSASRYMHMKTEYSAIYPSPAPFSSSEAFLDTNQAADQRNYEETSTAQPFGQEFLKAERQLDSVITTESPCVASEVSAETTKMRSTTDDDPRTYGFHDSNRPGGALNQLGIPEKLHTVSRASLRSSRLDTSHKVNLTSAGAGYTASAKSTGNRATSEMLCGTDYINYYSFARTASLVAEELIRKSPEKTNKSIEMSEEDLISEQAKAIIKKSTNFCWPSSQSVNAAARKEKCGWCFTCKVENDDRDCLFNSVVMPIQEVSKSDLVGFQPKNQNAHLKDVIFYILSLEDRLRGLLLGPWLSLHHSKNWRNNLLKASDVASIKCSLLTLESNLRPLALSADWWKHVDSAVTMGSACHIVASSRTSWRHSIGRKRARCSDIESSASSNASGLGTYWWRGGRLSRHLFNWKVLPCSLVTKAARQAGCAKIPGILYLENSDFPKRSKCVAWRAAVETSISVEQLAIQVRELDSNIRWHDIENTHPLWALDKESRKSIRLFKKVIVRRKSTERETVKYLLDFGKRRAIPDIVKKHGSLLEESSSDRKKYWLEEPYVPLHLIKNFEDKKIARKSNETKPGKVLAISGFNKRATQKRGFSYLFSRMERPTYHQCGHCNKDVLTREAVGCQYCNGFFHKRHVRKSGSTAECRYSCHRCLDGMHVNSNSKRRKLDPKLGNIQSQKGRKVPSVGRPVKQKCSKRPLSKRRQGKSQTNKKVPSSIPLRRSARKAKCLYVQKKRNVGRKKGKKSKSKKVTSRKPKETSRKPKETTSRSKTAVTFERKKRTHICNSYWLNGLRLSTKPNDERVMLFKEKKHLGTSEGLSSTFDQPKCHLCCGDACTLNYIACEICGEWFHGDAFGLTLENVRQLIGFRCHVCRDRTAPMCPHKNNNAMTHAEIKAATEYAEELHNSVSLQPLSQV 1594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1877g00003 1594 Pfam DDT domain 349 401 IPR018501 -
Pral1877g00003 1594 ProSiteProfiles Zinc finger PHD-type profile. 540 587 IPR019787 -
Pral1877g00003 1594 PANTHER PHD FINGER FAMILY PROTEIN 73 1559 - -
Pral1877g00003 1594 MobiDBLite consensus disorder prediction 765 779 - -
Pral1877g00003 1594 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 534 600 IPR013083 -
Pral1877g00003 1594 MobiDBLite consensus disorder prediction 149 165 - -
Pral1877g00003 1594 SMART PHD_3 542 585 IPR001965 -
Pral1877g00003 1594 SMART PHD_3 1505 1552 IPR001965 -
Pral1877g00003 1594 SMART PHD_3 1288 1333 IPR001965 -
Pral1877g00003 1594 MobiDBLite consensus disorder prediction 1405 1435 - -
Pral1877g00003 1594 ProSitePatterns Zinc finger PHD-type signature. 543 584 IPR019786 -
Pral1877g00003 1594 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 459 490 IPR028942 -
Pral1877g00003 1594 MobiDBLite consensus disorder prediction 1373 1387 - -
Pral1877g00003 1594 SUPERFAMILY FYVE/PHD zinc finger 536 596 IPR011011 -
Pral1877g00003 1594 SMART testlast3 345 405 IPR018501 -
Pral1877g00003 1594 MobiDBLite consensus disorder prediction 1 17 - -
Pral1877g00003 1594 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1498 1559 IPR013083 -
Pral1877g00003 1594 Pfam PHD-finger 543 585 IPR019787 -
Pral1877g00003 1594 MobiDBLite consensus disorder prediction 1436 1451 - -
Pral1877g00003 1594 ProSiteProfiles DDT domain profile. 345 405 IPR018501 -
Pral1877g00003 1594 MobiDBLite consensus disorder prediction 1340 1451 - -
Pral1877g00003 1594 MobiDBLite consensus disorder prediction 758 791 - -
Pral1877g00003 1594 SUPERFAMILY FYVE/PHD zinc finger 1503 1557 IPR011011 -
Pral1877g00003 1594 MobiDBLite consensus disorder prediction 125 167 - -
Pral1877g00003 1594 CDD PHD2_CHD_II 543 584 - -
Pral1877g00003 1594 MobiDBLite consensus disorder prediction 244 288 - -
Pral1877g00003 1594 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1877g00003 Pral-Chr1877 16452 28030 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1877g00003 29 1561 PHD Transcription Factor Family AT5G12400 41.110 0.0 1070
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Pral1877g00003 DDT 1.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1877g00003 - - gmx:100800973 1857.03