LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral1872g00011	ATGGAGATATCTCTGCACAAGAGTAAAACCCATCTGCTTTCTCTTTTGTTCATAACCAAAATTTTCTTGTTTCTCACAAACAATGCTAGTGCGACCTCAATAACCTTCAATTATGAGCAATTTCGTGATGTGGATCATCAGAACTTGAACCTTCAAGGAGATGTTTTCCAAGAAAATGGGATGCACATCAACCTCACCAGATACAAGAAAGAAAGTGCAGGGAGGGTAACAGACAACAACTCATTGCAACTTTGGGACAATAAGACAAGAACACTCGCAAACTTCACTACTCGTTTCACCTTCATCATCCACGTACTAAATGAAACTCGTGATGGGAAGGGAGATGGCATCACATTCTTCTTGGCAGAGCCTGGTTTTCCGTTTCCATCTCCCCCATATGGCACAGGTATTGGCCTTGTGAGTGGCGCACAGATGCAGGATCAAAATTATCTCGACGAACATCCATTCGTAGCAGTGGAATTTGACACCTTTCCCAATACGGATGTGGGTGATCCACCCTATGATCACGTAGGAATCCTTGCAAAAACAATGCAGACTAATCATAGAACGCAAGGGTACACTATGAATGATGGTAGAAAGTATGATGCTGAGATTACCTATGAGTCTAGCTCTTTCCAGTTAAGTGTCATGTTTACAGGATATAAGGATAACATCAACATAAGACAAAATCATTCCCGTACGATTGATTTGGGAGACTACCTACCAGAAGAAGTTCAATTTGGAGTCTCTTCAGCCACAGGGTTACGGTTTGAGTTACATACACTGTGTTCATGGTCCTTTAATTCAAGTCTTGGAGTGGCCGGAGTGATGCAAAGGGGTGAAAACAATAATAAGCGTTCGGTCATTGGATTGAGCATTGGATCAGTTTTAGTGATTGGCGTGTTATGCATGGCTTGGTTTCTGATATGGAGGTCAAATTGTAGAGTGGAAGGACGTGATCGCTTGGATCTTTCCTTGGACGAAGATTTTGAATGTGTCGGACCAAAGAAGTTTTCCTATAACGAACTTGTAAGAGCCACAAATAACTTCTCAGAGGAACATAAACTCGGAGAAGGAGGTTTTGGTGGGGTCTACAAAGGATTTATCAGAGGCTTGAATTCTTATGTTGCAGTAAAGAAGGGTTCCCATGAATCTAGACAAGGAGTGAAGGAGTATGCCGCTGAAGTAAAGATCATCGGTCAACTGAGGCACAAGAATTTGGTGCAACTCATGGGTTGGTGCCACGAGAAGAATGATTTTCTACTTATTTATGAGTTCATGCCAAGTGGAAGCTTAGATTATCATCTATATCGAAGCAGAAACCTTTTGACATGGCCAGTCAGATACAGTATTGCTAAAGGCTTAGCCTCAGCAGTACTATACCTTCATGAAGAGTGGGAGCAGTGTGTGGTTCACAGGGACATAAAATCAAGCAATATTATGTTAGATTCAAACTTCGATGCAAAGCTTGGAGATTTTGGGTTAGCAAGGCTCGTAGAACATGGAAAGCGCTCAGAAATAACAATTGTTGCAAGAACAAAAGGGTACATGGCTCCTGAATGTGCAACCATAAGCAAGGCAATAAAGGAGTCTGATATATACAGTTTTGGAATTGTTGCTCTAGAAATAGCTTGTGGGAGAAAGCCAATTGACCACTATGCTCCCAATGACCAAGTCATGATGGTGGAATGGGTATGGGAACTATATGGCAAAGGTGAGCTTCTTGAAGCAGCTGATAAGAGGTTTGATGGAGATTTTGATGAGCAAGAACTTGAAAGGCTAACGATTCTTTGGCTATCGTGTGCTCACCCAGATTATACTATGAGGCCTACAGTTAGACAAGCACTTTATGTACTTAACTTTGAAGCTTCACTGCCTACTCTCCCACCTACAATGCCCAAACCAACATATGTTGGTCCATCCTTTTCTGATATTGGTTCTTCAATTTATTCATCTGCATATGCTAGTTCTTCTGCAACCAATGACTCTAGGCCTTCAACCAATTGGAGGTCATACACTAAATCCTCACAATATTCATCCAATTCAGGCCACTCATCTGCAAAGGAAAAATTCTGA	2076	0.4162	MEISLHKSKTHLLSLLFITKIFLFLTNNASATSITFNYEQFRDVDHQNLNLQGDVFQENGMHINLTRYKKESAGRVTDNNSLQLWDNKTRTLANFTTRFTFIIHVLNETRDGKGDGITFFLAEPGFPFPSPPYGTGIGLVSGAQMQDQNYLDEHPFVAVEFDTFPNTDVGDPPYDHVGILAKTMQTNHRTQGYTMNDGRKYDAEITYESSSFQLSVMFTGYKDNINIRQNHSRTIDLGDYLPEEVQFGVSSATGLRFELHTLCSWSFNSSLGVAGVMQRGENNNKRSVIGLSIGSVLVIGVLCMAWFLIWRSNCRVEGRDRLDLSLDEDFECVGPKKFSYNELVRATNNFSEEHKLGEGGFGGVYKGFIRGLNSYVAVKKGSHESRQGVKEYAAEVKIIGQLRHKNLVQLMGWCHEKNDFLLIYEFMPSGSLDYHLYRSRNLLTWPVRYSIAKGLASAVLYLHEEWEQCVVHRDIKSSNIMLDSNFDAKLGDFGLARLVEHGKRSEITIVARTKGYMAPECATISKAIKESDIYSFGIVALEIACGRKPIDHYAPNDQVMMVEWVWELYGKGELLEAADKRFDGDFDEQELERLTILWLSCAHPDYTMRPTVRQALYVLNFEASLPTLPPTMPKPTYVGPSFSDIGSSIYSSAYASSSATNDSRPSTNWRSYTKSSQYSSNSGHSSAKEKF	691

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral1872g00011	691	Pfam	Legume lectin domain	34	274	IPR001220	GO:0030246
	Pral1872g00011	691	CDD	lectin_legume_LecRK_Arcelin_ConA	36	271	IPR001220	GO:0030246
	Pral1872g00011	691	FunFam	Lectin-domain containing receptor kinase A4.3	427	639	-	-
	Pral1872g00011	691	Gene3D	Transferase(Phosphotransferase) domain 1	427	639	-	-
	Pral1872g00011	691	MobiDBLite	consensus disorder prediction	656	691	-	-
	Pral1872g00011	691	FunFam	L-type lectin-domain containing receptor kinase IX.1	335	426	-	-
	Pral1872g00011	691	PANTHER	-	50	630	-	-
	Pral1872g00011	691	SUPERFAMILY	Concanavalin A-like lectins/glucanases	31	271	IPR013320	-
	Pral1872g00011	691	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	470	482	IPR008271	GO:0004672\|GO:0006468
	Pral1872g00011	691	Gene3D	-	31	278	-	-
	Pral1872g00011	691	SUPERFAMILY	Protein kinase-like (PK-like)	334	640	IPR011009	-
	Pral1872g00011	691	Pfam	Protein kinase domain	351	616	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral1872g00011	691	Gene3D	Phosphorylase Kinase; domain 1	335	426	-	-
	Pral1872g00011	691	MobiDBLite	consensus disorder prediction	656	685	-	-
	Pral1872g00011	691	ProSiteProfiles	Protein kinase domain profile.	350	628	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral1872g00011	691	ProSitePatterns	Legume lectins beta-chain signature.	157	163	IPR019825	-
	Pral1872g00011	691	SMART	serkin_6	350	624	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral1872g00011	691	ProSitePatterns	Protein kinases ATP-binding region signature.	356	380	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral1872g00011	Pral-Chr1872	63910	69414	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral1872g00011	21	637	Receptor kinase-like Gene Family	AT5G10530	43.265	3.00e-155	462

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Pral1872g00011		Pkinase	9e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral1872g00011	-		-	jre:109007094	643.654