Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1872g00007 ATGGCAGCTAGCCAATACTGTAACAAGCCTCATTCTCATCATCATCATCTTCTTCTTCTTCTTCCTTCTCTGCAATTCATTACCCCCATAACGCTATTATTCTTTCTTACATGCCCTTCTACTCTCTCTTCACTTTCCTTCAGCTACGACCAGTTCAAGCAGAATGATCCAACCTTAAAATTGGAGGGAGATGTTTACCATGATAATGGATCTCTGCAGCTCACAAGGTTTGAAAGAGACAGTCTTGGTAGAGTCATTTACTACAAAAATCTCCATCTGTGGGACAAAACAACAGGAAAAGTCACAGATTTTTCTTCCCATTTCTCTTTCATCATCAATTCACCAAACAAAACCTTCAATCTTGGAGATGGAATCACCTTCTTCCTTGCAGCACCAAACTTTCCTCTTCCTGTTCCCAGAGATGGCTCAGGGATCGGCCTTGTGAGTCGTTATCAGTTGAAAGATCAAAACTATACAGACCTGAATCCTTTTGTGGCTGTGGAGTTTGATACCATGAAAAATGATTGGGATCCTCCATATGATCATGTGGGGATTGATGTTAAGTCTATAAGCACAGCTTATACTACACCGTGGTTCAGTGTTAAAGATGGAAGAATTTATGATGCTGTTATCAGTTACAATTCAAGTTCATTCAATTTGACTGTGAGTTTTGATGGTTATCAGAATAACAACACCAAGGTTGAACAGAGTTACAATGGAATTGTGAATCTGACTGATGTTCTTCCAGAGTGGGTTGAGTTTGGATTCTCTTCTGCAACTGGGGATTACTTTGAGATCCATACACTTTGCTCTTGGTCCTTCAATTCAAGTTTGGACATGCAAGATCAGAACAATGAGAATAATACTCAGAACAGTAAGAGCAAGAAGGGACTAATAGCAGGATTGAGCATAGGAGGAGGTGTTTTATTAATCTGTGGAATAGGGTTAACTATTTGTCTTATGACTTGGAATATCAGAAGAAGAAGGAGAAGAAGAGAAAGAAGGAGAAGCATGGATGGTTTTGACTTTGAGCTAAGCATGGAGATTGAGTTTCAGAACAGCACAGGGCCTAAGAAGTTTCCATACAAGCAACTTGTTAAAGCAACATACAAGTTTGCAAAAGAAAATAAGCTTGGAGAGGGAGGATTTGGTGGGGTATACAAAGGGTTTGTTGAAGAATTGAATAGCTATGTTGCTATTAAGAAGATATCACAAGGATCTAAACAAGGGGTTAAGGAGTATGCATCAGAGGTAAAGATTATCAGTCAATTGAGGCATAAGAATCTGGTTTGGCTAATTGGGTGGTGCCATGAGTACAATGATTTAATTCTAGTTTATGAGTTCATGCAAAATGGAAGCTTAGATTCTCATCTCTTCAAAGGCAAAAGTCTCCTGGCATGGGGACAAAGATATAACATTGCTCAAGGTCTAGCCTCAGCATTACTATATTTGCACGAAGAGTGGGAACAATGCGTGGTTCATAGGGATATAAAAGCCAGCAATGTCATGTTAGACTCAAACTTCAATGCAAAGCTTGGAGATTTCGGGTTGGCCAGACTTGTGGACCACGGAAAAGGGTCAAAAACAACCATCCTAGCAGGAACTTTCGGATACATGGCTCCTGAATATGCTGCTAAAGGAAAGGCAAGTAGAGAGACTGATGTTTACAGTTTTGGACTCGTGGCTTTGGAAATAGCATGCGGTAGAAAATCAATAGAACAAAATGCCAATGAAGAACAGAAGGATGATCCAACATTAAAACTTGAAGGAGGTGTTCACTGTGAAAATGGATGCCTGAACCTCACTGAGTTAGAGCAAAACAGCGTTGGGAGAGTCACCTACGGCGAAAATCTCCATCTTTGGGATGAGATGACCGGAAAAGTCACAGATTTTTCTTCCCATTTCTCCTTCATCATCAATACACAAGGCAAGACCACCAATCTTGGAGATGGCATAACCTTCTTCCTTGCCGCACCAGGCTTTCCCCTTCCTGATCCTAGAGATGGAGCCGGAATTGGCCTCGTGAGTCGTCTGCAATTGAAAGATCCAAATTACAGAAAGCAGCATCCTTTTGTGGCTGTGGAGTTTGACACCTTCCCAAATCCTGATTTGGATCCTCCTTATGATCATGTGGGGATTGATATTAATTCTCTGAACCGAACTTACACTAAAAAGTGGTTCACTGTCAAGGATGGAAGAAAATATGATGCCGTGATTAAGTACGATTCAGGTTCTTTCAATTTGAGTGTTAGTTTTATTGGATATGAGAACGGCTCCAGAATTGAACAGAATTTCTTTCATATTGTCAATTTGGCTTTTGTTCTTCCAGAGTGGGTTGAGTTTGGATTCTCTTCTGGAACAGGTTATTTCCGTGATGAGATCCATACTCTTTGCTCTTGGTCCTTCAGTACATGTTTAGACATGGAAGATCAGAACAATCAGAGCAAGATAGGACTTATAAAAGCATTGAGCATAGGAGGAGGTGTTTTAATTTGTGGAATGGGGTTATTTTTCTTTATGATTTGGAGAAGACGAAGAGGAAGAAGAATTGGTGCTTTTGGCTTTGAGCTAATAAGCATGGAAGATGAGTTTCAGAGAATGATAGGGCCGAATAAGTTTCCATATAATCAGCTTGTCAAAGCAACAGACAACTTTACACAAGAGAATAAGCTTGGAGAGGGAGGATTTGGTGGGGTTTACAAAGGGTTCATAGAAGAATTGAATAGCTATGCTGCTATTAAAAGGATATCACAAGGATCTAAGCAAGGGGTGAAGGAGTATGCATCAGAGGTCAAGATCATCAGCCAACTGAGGCATAAGAATCTGGTTCGACTGATCGGTTGGTGCCATGAGCACAATGACTTAATGCTGGTTTACGAGTTCATGCAAAACGGAAGCTTAGATTCTCATCTCTTCAAAGGCAAAAGTCTCTTGACATGGGAACAAAGATACAACATAGCTCAAGGCCTGGCCTTAGCATTATATTACCTCCATGAAGAGTGTGAACAATGTGTGGTTCATAGGGACATAAAAGCAAGCAATGTTATGTTAGATCCAAAATTCAACGCAAAACTCGGAGATTTTGGGTTGGCTAGACTGGTGGACCATGCAAAAGGGTATAAAACAACAGATCTAGCAGGAACCTTCGGATATATGGCTCCCGAATACATCTCCAAAGGAAAGGCCAGTAGAGAGACTGATGTGTATGGTTTTGGAGTCGTCGCTTTGGAAATTGCTTGCGGGAGAAAAGCAATCCAATTTAGTGCCAATGAAGAACGGGTTTTACTTGTGGACTGGGTTTGGGAACTCCATAGCGGAGAAAGTGTTCTTGAAGCAGCTGATCAGAGATTGTGTGGAGACTTCAGTGAGCAGGAAATGCAGAGGTTGATGATGGTGGGATTATGGTGTGCTCATCCGGATCATATTCAAAGGCCTCCTATGAGACAAGTAGTTCAGGTGCTTAATTTTGAAGCTGCTTTACCCAATCTGCCATCCCAGAAGCCTGCTCTTCCAAATGATTCTGTTGGAATCAGTGACTTTATATTTTCAAACTCTTCATCAAGTGCTAGTGCTTCGAGGATCAATCGTACCTTACCTTTAAGTGATGGCTTTTTCACTGACTCATCACAATCAAGCATTTCTCCAGCAGACCCCATTCTGCACACACACTAA 3672 0.4104 MAASQYCNKPHSHHHHLLLLLPSLQFITPITLLFFLTCPSTLSSLSFSYDQFKQNDPTLKLEGDVYHDNGSLQLTRFERDSLGRVIYYKNLHLWDKTTGKVTDFSSHFSFIINSPNKTFNLGDGITFFLAAPNFPLPVPRDGSGIGLVSRYQLKDQNYTDLNPFVAVEFDTMKNDWDPPYDHVGIDVKSISTAYTTPWFSVKDGRIYDAVISYNSSSFNLTVSFDGYQNNNTKVEQSYNGIVNLTDVLPEWVEFGFSSATGDYFEIHTLCSWSFNSSLDMQDQNNENNTQNSKSKKGLIAGLSIGGGVLLICGIGLTICLMTWNIRRRRRRRERRRSMDGFDFELSMEIEFQNSTGPKKFPYKQLVKATYKFAKENKLGEGGFGGVYKGFVEELNSYVAIKKISQGSKQGVKEYASEVKIISQLRHKNLVWLIGWCHEYNDLILVYEFMQNGSLDSHLFKGKSLLAWGQRYNIAQGLASALLYLHEEWEQCVVHRDIKASNVMLDSNFNAKLGDFGLARLVDHGKGSKTTILAGTFGYMAPEYAAKGKASRETDVYSFGLVALEIACGRKSIEQNANEEQKDDPTLKLEGGVHCENGCLNLTELEQNSVGRVTYGENLHLWDEMTGKVTDFSSHFSFIINTQGKTTNLGDGITFFLAAPGFPLPDPRDGAGIGLVSRLQLKDPNYRKQHPFVAVEFDTFPNPDLDPPYDHVGIDINSLNRTYTKKWFTVKDGRKYDAVIKYDSGSFNLSVSFIGYENGSRIEQNFFHIVNLAFVLPEWVEFGFSSGTGYFRDEIHTLCSWSFSTCLDMEDQNNQSKIGLIKALSIGGGVLICGMGLFFFMIWRRRRGRRIGAFGFELISMEDEFQRMIGPNKFPYNQLVKATDNFTQENKLGEGGFGGVYKGFIEELNSYAAIKRISQGSKQGVKEYASEVKIISQLRHKNLVRLIGWCHEHNDLMLVYEFMQNGSLDSHLFKGKSLLTWEQRYNIAQGLALALYYLHEECEQCVVHRDIKASNVMLDPKFNAKLGDFGLARLVDHAKGYKTTDLAGTFGYMAPEYISKGKASRETDVYGFGVVALEIACGRKAIQFSANEERVLLVDWVWELHSGESVLEAADQRLCGDFSEQEMQRLMMVGLWCAHPDHIQRPPMRQVVQVLNFEAALPNLPSQKPALPNDSVGISDFIFSNSSSSASASRINRTLPLSDGFFTDSSQSSISPADPILHTH 1223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1872g00007 1223 SMART serkin_6 885 1159 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1872g00007 1223 SMART serkin_6 372 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1872g00007 1223 FunFam Lectin-domain containing receptor kinase A4.3 962 1172 - -
Pral1872g00007 1223 FunFam L-type lectin-domain containing receptor kinase IX.1 870 961 - -
Pral1872g00007 1223 ProSitePatterns Legume lectins alpha-chain signature. 775 784 IPR000985 -
Pral1872g00007 1223 FunFam Lectin-domain containing receptor kinase A4.3 449 586 - -
Pral1872g00007 1223 ProSitePatterns Legume lectins beta-chain signature. 692 698 IPR019825 -
Pral1872g00007 1223 Gene3D - 43 293 - -
Pral1872g00007 1223 SUPERFAMILY Protein kinase-like (PK-like) 350 577 IPR011009 -
Pral1872g00007 1223 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1005 1017 IPR008271 GO:0004672|GO:0006468
Pral1872g00007 1223 ProSiteProfiles Protein kinase domain profile. 885 1160 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1872g00007 1223 ProSitePatterns Serine/Threonine protein kinases active-site signature. 492 504 IPR008271 GO:0004672|GO:0006468
Pral1872g00007 1223 ProSitePatterns Legume lectins beta-chain signature. 165 171 IPR019825 -
Pral1872g00007 1223 Gene3D Transferase(Phosphotransferase) domain 1 449 611 - -
Pral1872g00007 1223 Gene3D Transferase(Phosphotransferase) domain 1 962 1173 - -
Pral1872g00007 1223 ProSitePatterns Protein kinases ATP-binding region signature. 378 402 IPR017441 GO:0005524
Pral1872g00007 1223 CDD STKc_IRAK 891 1155 - -
Pral1872g00007 1223 CDD lectin_legume_LecRK_Arcelin_ConA 45 278 IPR001220 GO:0030246
Pral1872g00007 1223 ProSitePatterns Legume lectins alpha-chain signature. 248 257 IPR000985 -
Pral1872g00007 1223 PANTHER - 597 1164 - -
Pral1872g00007 1223 SUPERFAMILY Concanavalin A-like lectins/glucanases 583 807 IPR013320 -
Pral1872g00007 1223 CDD lectin_legume_LecRK_Arcelin_ConA 581 806 IPR001220 GO:0030246
Pral1872g00007 1223 Pfam Legume lectin domain 44 288 IPR001220 GO:0030246
Pral1872g00007 1223 Pfam Legume lectin domain 582 815 IPR001220 GO:0030246
Pral1872g00007 1223 FunFam L-type lectin-domain containing receptor kinase IX.1 357 448 - -
Pral1872g00007 1223 Gene3D - 689 824 - -
Pral1872g00007 1223 ProSitePatterns Protein kinases ATP-binding region signature. 891 914 IPR017441 GO:0005524
Pral1872g00007 1223 Gene3D Phosphorylase Kinase; domain 1 357 448 - -
Pral1872g00007 1223 Gene3D Phosphorylase Kinase; domain 1 870 961 - -
Pral1872g00007 1223 Pfam Protein kinase domain 373 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1872g00007 1223 Pfam Protein kinase domain 885 1152 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1872g00007 1223 SUPERFAMILY Protein kinase-like (PK-like) 862 1156 IPR011009 -
Pral1872g00007 1223 ProSiteProfiles Protein kinase domain profile. 372 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1872g00007 1223 SUPERFAMILY Concanavalin A-like lectins/glucanases 43 284 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1872g00007 Pral-Chr1872 41739 51062 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1872g00007 30 574 Receptor kinase-like Gene Family AT5G10530 45.554 2.12e-140 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Pral1872g00007 Pkinase 2.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1872g00007 - - gmx:100817213 701.819