Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1870g00003 ATGGCCGTTCAGGCTCAGTATCCTTCCAATATCCTCCTCCTCCACAATCACAACAACAACACCAGCAACCTACAACCAGATTATGACTCTTCCTTCCCACCTGCGGAAGCACTTCTTCATCAATCTCACATGTTATTCGCCAATGGAGGTAGTACGAATCCTTCAAAAAGATCATCACAAAGTAGACCGCCCATTGCGGTTGCTCAGGCAGTCCCTAATGTTGTGAATTCTATGTCTCTGCAATCTCCTCAGCTTCTGGAACTCTCTCAACTGCATAATCACCACCACAATAGCGTCTCCACCGGCCTCCGCTTATCTTCCTTCGCCGATCAACAACCACTTCACTTGCTGCCGCACCAACGACAACAATCATCGCAGGATGCATCTCATTACTCCCCTGTATCGCCTCTTTTCTCTCAAGATTTTGCCTCTCAAATCAAACAGCACCGAGACGAAATCGACCAGTTTCTTCGAGCACAGGAAGCGGAATTACATCGGACATTGGCGGAGAAAAGGCAGAGACACTACCGAGTGCTACTCGCCACGGCGGAAGAAACCATGGCGAGGCGGTTGAGGGAGAAAGACCTGGAGGTGGAGAAAGTCACGCGCATGAACGCCCAGTTAGAGGCACGCGCCGCGCAACTGAGCGCCGAAGCACAGCTCTGGCAGGCAAAAGCAAAAGCACAAGAAGCAACGGCCGCTTCCTTACAGGCCCAACTGCAACAGGCCATGATGAATGGTACGGCCTCAGAAAAGAGAGATGAGGGTGGGCTGTCCTGCGCGGCGGGAGCCGACGACGCCGAGTCGGTATACGTTGACCCGGACCGATTCGAACCGACCGGACCGAAATGCAGAGGGTGTGGGAAGTGGGTGGCTTCGGTGGTGGTATTGCCGTGTCGGCATCTGTGCATGTGTGCCAAATGCGACGTCCATTTCCGAGCATGTCCGGTTTGTCTTTCCCTCAAAGAGTCAACCGTTGAGGTTTTCCTAACTTAG 996 0.5291 MAVQAQYPSNILLLHNHNNNTSNLQPDYDSSFPPAEALLHQSHMLFANGGSTNPSKRSSQSRPPIAVAQAVPNVVNSMSLQSPQLLELSQLHNHHHNSVSTGLRLSSFADQQPLHLLPHQRQQSSQDASHYSPVSPLFSQDFASQIKQHRDEIDQFLRAQEAELHRTLAEKRQRHYRVLLATAEETMARRLREKDLEVEKVTRMNAQLEARAAQLSAEAQLWQAKAKAQEATAASLQAQLQQAMMNGTASEKRDEGGLSCAAGADDAESVYVDPDRFEPTGPKCRGCGKWVASVVVLPCRHLCMCAKCDVHFRACPVCLSLKESTVEVFLT 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1870g00003 331 PIRSF SBP1_RNase_bind 1 331 IPR017066 -
Pral1870g00003 331 Gene3D - 293 329 - -
Pral1870g00003 331 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 56 328 IPR017066 -
Pral1870g00003 331 Coils Coil 191 246 - -
Pral1870g00003 331 Pfam Zinc finger, C3HC4 type (RING finger) 283 319 - -
Pral1870g00003 331 ProSiteProfiles Zinc finger RING-type profile. 284 318 IPR001841 -
Pral1870g00003 331 CDD mRING-HC-C3HC5_CGRF1-like 282 318 - -
Pral1870g00003 331 Gene3D Death Domain, Fas 173 292 IPR011029 -
Pral1870g00003 331 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 266 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1870g00003 Pral-Chr1870 26024 27967 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1870g00003 212 328 C3H Transcription Factor Family AT3G06140 27.419 3.28e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1870g00003 K19042 - gmx:100797727 338.576